BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319073
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22040.1 | Symbols: | Domain of unknown function (DUF26) | ... 697 0.0
AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr... 424 8e-118
AT3G22020.1 | Symbols: | Receptor-like protein kinase-related ... 202 4e-51
> AT3G22040.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7761807-7762675 FORWARD LENGTH=774
Length=774
Score = 697 bits (377), Expect = 0.0
Identities = 635/753 (84%), Gaps = 43/753 (6%)
Strand=Plus/Plus
Query 7 CTCGTTTCTTTCCATATCTTGGCTATACAACTCCTCATACGC-AGCGTTTCATCCCTGAA 65
||||||||||||||||||||||| ||||||||| |||||| | |||||| |||| |||||
Sbjct 31 CTCGTTTCTTTCCATATCTTGGCCATACAACTCTTCATAC-CTAGCGTTGCATCACTGAA 89
Query 66 TATTACTAATGAGTATCTGAACCACAAATGTCGGGTTGAACAAGGAAAATACCAGCCAGG 125
| |||| |||| ||| || |||||||||| ||||||| ||||| |||||||| || ||
Sbjct 90 TCTTACAAATGTGTACCTTCACCACAAATGCCGGGTTGGTCAAGGTAAATACCACCCGGG 149
Query 126 AAGTGAG-TACGAGAAAGACCTCAACTCTATCACCGGTAAT-GTCGCTACCGAA-AAATT 182
|||| || |||||||||||| || ||||| ||||| || | |||||| | || || ||
Sbjct 150 AAGT-AGATACGAGAAAGACTTCGACTCTCTCACCAGT-TTCGTCGCT-GCTAATAAGTT 206
Query 183 TGTAAACGGGTTCGTACACAGCGC-AATTAAAGACGGTACCAATTCCGCTACCGTCATAT 241
| || | ||||||||||||||| | || || |||||| |||||||| ||||| ||||||
Sbjct 207 TATAGATGGGTTCGTACACAGCTCTAA-TAGTGACGGTCCCAATTCCACTACCATCATAT 265
Query 242 TCCAATGTCGGGGTGACTCTTACAGGTCCAAGTG-C-AACTCCTGCTATGCCACCGCACT 299
|||| ||||| ||||||||||||| ||| || || | || ||||||||| |||||| ||
Sbjct 266 TCCAGTGTCGTGGTGACTCTTACAAGTCTAACTGTCGAA--CCTGCTATGACACCGCTCT 323
Query 300 CGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGAGGGATAATATGGTACGATCAATG 359
||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 324 GGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGTGGAATAATATGGTACGACCAATG 383
Query 360 TTTTCTCGATATTAGTATGATCAATGAAGGAGCCCCAAGGAA-AGTCAATTACAAGAATA 418
|||||||||| |||||||||||||||| |||||||||||| | ||||||||||| |||
Sbjct 384 TTTTCTCGATGTTAGTATGATCAATGACCTAGCCCCAAGGAAGA-TCAATTACAAGGATA 442
Query 419 CTTTCCCTATGCACAACCCAAACAATGTGAGAGGGGATACAAAGTTGTTTAACAAGAAGA 478
|||| ||||||||||||||||||||||||| |||||||||||| |||| | ||||||||
Sbjct 443 CTTTTGCTATGCACAACCCAAACAATGTGAGGGGGGATACAAAGATGTTCAGCAAGAAGA 502
Query 479 CAAATGATTTTTTCCAACAGCTGATTGCGAAAGCTGATAAAGCCGACAAGGATGACATCG 538
|||||||||| ||||||||||||||| ||||||||||||| |||||| ||| | | |||
Sbjct 503 CAAATGATTTCCTCCAACAGCTGATTGTGAAAGCTGATAAACCCGACATGGACGGCGTCG 562
Query 539 AGTTGTTATATTATGCGGCAGGAGAGAAGAGAATCGGGACG-AATAAACTGTATGCAATG 597
||||||||||||||||||| ||||||| ||||||||||| | || |||||| |||| |||
Sbjct 563 AGTTGTTATATTATGCGGCGGGAGAGATGAGAATCGGGAGGGAA-AAACTGCATGCGATG 621
Query 598 GTGCAGTGT---AA-G---T--C----T-T--GT-TTG---G-AATGGAGTATCA-GCCA 635
||||||||| || | | | | | || ||| | |||||||| ||| | |
Sbjct 622 GTGCAGTGTGCGAAAGACCTAGCGGACTGTAAGTCTTGTTTGGAATGGAGTTTCAAGG-A 680
Query 636 TCTTTCTAAGTGTTGCGACGGTAAACAAGGAGCGAGAGTTTTGGGTACA-GCCTGTAATC 694
||||||||||| ||||||||||||| |||||||||| ||||||||||| || |||||||
Sbjct 681 GCTTTCTAAGTGCTGCGACGGTAAACGAGGAGCGAGATTTTTGGGTACAAGC-TGTAATC 739
Query 695 TTAGTTATGAGCTATATCCTTTTCTTAGGACTT 727
|||| ||||||||||||||||||||||||||||
Sbjct 740 TTAGGTATGAGCTATATCCTTTTCTTAGGACTT 772
> AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr3:7759317-7760738
FORWARD LENGTH=762
Length=762
Score = 424 bits (229), Expect = 8e-118
Identities = 595/761 (78%), Gaps = 67/761 (9%)
Strand=Plus/Plus
Query 7 CTCGTTTCTTTCCATATCTTGGCTATACAACTCCTCATACGCAGCGTTTCATCCCTGAAT 66
||||||||||||||||| |||||||||||| |||||||| || | | || ||| |||||
Sbjct 31 CTCGTTTCTTTCCATATATTGGCTATACAAGTCCTCATAAGCTGTGCGTCTTCCTTGAAT 90
Query 67 ATTACTAATGAGTATCTGAACCACAAATGTCGGGTTGAACAAGGAAAATACCAGCCAGGA 126
||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||
Sbjct 91 CTTACTAATGAGTATCTGAACCACAAATGTCGCGT-GATCAAGGAAAATACCAACCAGGA 149
Query 127 AGTGAGTACGAGAAAGACCTCAACTCTATCA-CCGGTA-ATGTCGCTACCGAAAAATTTG 184
||||||||||||||||| |||||| || ||| ||| || | || |||||| | |||
Sbjct 150 AGTGAGTACGAGAAAGAACTCAACACTCTCAGCCG-TAGA-GTTGCTACCCTTGACTTTA 207
Query 185 TAAACGGGTTCGTACACAGCG--C-AATTAA-AGACGGTACCAATTCCG-CTACCGTCAT 239
| | || ||| ||||| || | ||| | ||| | |||||| || | | ||| ||||
Sbjct 208 CAGATGGTTTC--ACACACCGGTCCAAT-AGTAGA-GATACCAAATCTGTC-ACCATCAT 262
Query 240 ATTCCAATGTCGGGGTGACTCTTACAGGTCCAAGTGCAACTCCTGCTATGCCACCGCACT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 263 ATTCCAATGTCGCGGTGACTCTTACAGGTCCAAGTGCAACTCCTGCTATGCTACCGCCCT 322
Query 300 CGCCGGGTTTCGTAAGAGATGTCCAAGAAACAAAGGAGGGATAATATGGTACGATCAATG 359
||||||| || | | || ||||||||||| || ||||||||||| || |||||
Sbjct 323 CGCCGGG----GT--G---T--CCGAGAAACAAAGGTGGAATAATATGGTATGACCAATG 371
Query 360 TTTTCTCGATATTAGTATGATCAATGA-AGGAGCCCCAAGGAAAG-TCAATTACAAGAAT 417
|||||||||| |||||||||| ||||| | ||||||| | | | || ||| | |||
Sbjct 372 TTTTCTCGATGTTAGTATGATTAATGACAATT-CCCCAAG-ACGGATGAACTACGATAAT 429
Query 418 ACTTTCCCTATGCACAACCCAAACAATGTGAGAGGGGATACAAAGTTGTTTAACAAGAAG 477
| ||| ||||||||||||||||||| ||||||||| || ||| | || ||||| |||
Sbjct 430 ATTTTTTCTATGCACAACCCAAACAACGTGAGAGGGAATGTAAACTCATTCAACAAAAAG 489
Query 478 ACAAATGATTTTTTC--CAACAGCTGATTGCGAAA-GCTGATAAAGC-CGACAAGGATGA 533
|| | ||| || || ||| | ||||||| |||| ||||||| | | |||| ||| |
Sbjct 490 ACGACTGAATTCCTCTACAA-A-CTGATTG-GAAAAGCTGATAGA-CTCGACGTGGACGG 545
Query 534 CATCGAGTTGT-TATATTATGCGGCAGGAGAGAA-GAGAATCGGGACGAATAA-ACTGTA 590
||| | || | ||||||| |||||||| || || ||| | |||| | | || | |||
Sbjct 546 GATCAACTT-TCTATATTACGCGGCAGGGGA-AATGAGGCTTGGGAAGCA-AACATTGTT 602
Query 591 TGCAATGGTGCA--GTG---------TA---AGTC-T-----T-GTTTGGAATGGAGTAT 629
|||||||||||| ||| || ||| | | ||||||||||||||||
Sbjct 603 TGCAATGGTGCAATGTGCGAAGGACATATTGAGTTGTAAGGATTGTTTGGAATGGAGTAT 662
Query 630 CA-GCCATCTTTCTAAGTGTTGCGACGGTAAACAAGGAGCGAGAGTTTTGGGTACAGCCT 688
|| | | ||||||||||| || || ||||||||||||||||||||| | |||||| |
Sbjct 663 CAAGG-AGCTTTCTAAGTGCTGTGATGGTAAACAAGGAGCGAGAGTTGTAGGTACAATTT 721
Query 689 GTAATCTTAGTTATGAGCTATATCCTTTTCTTAGGACTTAA 729
|||||||||| ||||||||||| ||||||||||||||||||
Sbjct 722 GTAATCTTAGGTATGAGCTATACCCTTTTCTTAGGACTTAA 762
> AT3G22020.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7756577-7757491 FORWARD LENGTH=624
Length=624
Score = 202 bits (109), Expect = 4e-51
Identities = 296/382 (77%), Gaps = 29/382 (8%)
Strand=Plus/Plus
Query 239 TATTCCAATGTCGGGGTGACTCTTACAGGTCCA-AGTGCAACTCCTGCTATGCCACCGCA 297
|||||||||| || || ||||| ||| |||| | | ||| || ||||||||||||||
Sbjct 164 TATTCCAATGCCGTGGAGACTCCTACGGGTCTATA-TGCGGTTCTTGCTATGCCACCGCT 222
Query 298 CTCGCCGGGTTTCGTAAGAGATGTCCA-AGAAACAAAGGAGGGATAATATGGTACGATCA 356
| |||||| |||||||||||||| || ||| ||||||||| ||||||||||| |||||
Sbjct 223 GTGGCCGGGCTTCGTAAGAGATGT-CAGAGATACAAAGGAGCAATAATATGGTATGATCA 281
Query 357 ATGTTTTCTCGATATTAGTATGAT-CAATGAAGGAGCC-CCAAGGAAAG-TCAATTACAA 413
|||||||||| | | |||| | | | || || || |||| | ||| | ||||| |
Sbjct 282 ATGTTTTCTC-A-A--AGTAAG-TACGATCAACTCCCCTCCAACG-AAGATGGATTACGA 335
Query 414 GAATACTTTCCCTATGCACAACCCAAACAATGTGAGA-GGGGATACAAAGTTGTTTAA-C 471
||||||||| ||||||||||||||||||| | | | |||||||| ||||||| || |
Sbjct 336 GAATACTTTTTCTATGCACAACCCAAACAACATCA-ACGGGGATACTCAGTTGTTCAACC 394
Query 472 AAGAAGACAAATG-ATTTTTTCCAACAGCTGATTGC-GAAAGCTGATAAAGCCGACAA-- 527
|| |||| || | |||| || | |||| | || |||||| |||||| || | ||
Sbjct 395 AA-AAGATGAA-GAATTTCCTCTATGAGCT-AGCGCTGAAAGCGGATAAA-CCCA-AAGC 449
Query 528 GGATGACATCGAG-TTGTTATATTATGCGGCAGGAGA-GAAGAGAATCGGGACGAATAAA 585
||| | | || | ||| ||||||| |||||||| || |||||| |||||| |||||||
Sbjct 450 GGACGGTACCG-GTTTGCTATATTACGCGGCAGG-GACGAAGAGGCTCGGGAAGAATAAA 507
Query 586 CTGTATGCAATGGTGCAGTGTA 607
||||||||||||||||||||||
Sbjct 508 CTGTATGCAATGGTGCAGTGTA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5