BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319082

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G23715.1 | Symbols: SCRL13 | SCR-like 13 | chr3:8536850-8537...   379    7e-105


> AT3G23715.1 | Symbols: SCRL13 | SCR-like 13 | chr3:8536850-8537273 
FORWARD LENGTH=288
Length=288

 Score =  379 bits (205),  Expect = 7e-105
 Identities = 263/291 (90%), Gaps = 3/291 (1%)
 Strand=Plus/Plus

Query  1    ATGAGGTGTGCTACATCGTTTGTAGTTTTGTGTATTCTCATGTTCCTTGTGTTAAACAAT  60
            |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  1    ATGAGGTGTGTTACCTCGTTTGTAGTTTTGTGTATTCTCATGTTCCTTGTGGTAAACAAT  60

Query  61   GTTAAAGTAGATGTGAAAGCACAACGACGGAAACCTCTGTGTAAAATGACTGGTCTTCTA  120
            ||||||||||||||||||||||||||| |||||||| | |||||| |||||||| | |||
Sbjct  61   GTTAAAGTAGATGTGAAAGCACAACGAAGGAAACCTGTTTGTAAATTGACTGGTGTCCTA  120

Query  121  ACCCCTGGAAAATGCCCCATAACTATCCATGATGCAAGCAACTTGTGTAATCGCCAATTG  180
            | |||||||||||| |||| | |||| |||||||||||||||||||||| |||| |||||
Sbjct  121  AACCCTGGAAAATGTCCCACAGCTATACATGATGCAAGCAACTTGTGTAGTCGCAAATTG  180

Query  181  GCGTCGCCTGATAGGACATTTAAGCGTTGCGACTGTCAAAACACTATTAAATGGCGAGGG  240
            || || ||| ||| |||||||||||||||||||||||||||||||   || |||||||||
Sbjct  181  GCTTCACCTAATATGACATTTAAGCGTTGCGACTGTCAAAACACTG--AA-TGGCGAGGG  237

Query  241  AAAGACCACTATCAATGCACATGTTATCTGAGACTCCCTTGCAACGAATAG  291
            ||||||||||||||||||||||||||| | | ||||||||||||| |||||
Sbjct  238  AAAGACCACTATCAATGCACATGTTATATAAAACTCCCTTGCAACCAATAG  288



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5