BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319110
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24120.2 | Symbols: | Homeodomain-like superfamily protein ... 1380 0.0
AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily pro... 654 0.0
> AT3G24120.2 | Symbols: | Homeodomain-like superfamily protein
| chr3:8705636-8708315 REVERSE LENGTH=1353
Length=1353
Score = 1380 bits (747), Expect = 0.0
Identities = 848/898 (94%), Gaps = 2/898 (0%)
Strand=Plus/Plus
Query 1 ATGTACTCAGCGATTCGCTCGCTTCCACTCGATGGTGGACACGCCGCCGGTGACTACCAT 60
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 168 ATGTACTCAGCGATTCGCTCGCTTCCACTCGATGGTGGACACGTTGGTGGTGACTACCAT 227
Query 61 GGACCTCTTGACGGAACTAATCTTCCCGGCGACGCTTGTTTGGTTTTAACCACTGACCCT 120
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 228 GGACCTCTTGACGGAACCAATCTTCCCGGTGACGCTTGTTTGGTTTTAACGACTGACCCT 287
Query 121 AAACCTCGTCTCCGGTGGACAACTGAGCTCCATGAGAGATTCGTTGACGCTGTTACCCAG 180
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 288 AAACCTCGTCTCCGGTGGACAACTGAGCTTCATGAGAGATTCGTTGACGCCGTTACTCAG 347
Query 181 CTCGGTGGTCCTGACAAAGCGACGCCCAAAACTATCATGAGAACAATGGGAGTGAAGGGT 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 348 CTCGGTGGTCCTGACAAAGCGACTCCCAAAACTATTATGAGAACAATGGGAGTGAAGGGT 407
Query 241 CTCACTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGACTAGGGAGACAAGCTGGC 300
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 408 CTCACTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGCCTAGGGAGGCAAGCTGGC 467
Query 301 AAAGAATCAACTGAGAACTCTAAGGATGCTTCTTGTGTTGGGGAGAGTCAGGACACAGGT 360
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 468 AAAGAATCAACTGAGAACTCTAAAGATGCTTCTTGTGTAGGGGAGAGTCAGGACACAGGT 527
Query 361 TCATCTTCAACATCATCATTGAGAATGGTGCAGCAGGAGCAGAACGAGGGTTACCAAGTC 420
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 528 TCATCTTCGACATCATCAATGAGAATGGCGCAGCAGGAGCAGAACGAGGGTTACCAAGTC 587
Query 421 ACTGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAAACTACATGAGCAATTGGAGCAT 480
|| |||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||
Sbjct 588 ACCGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAGACTACACGATCAATTGGAGTAT 647
Query 481 GGGCAGGTGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGGAAAGTACCTTCAATCG 540
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 648 GGGCAGGTGCAACGGAGGCTCCAGCTGAGGATAGAGGCACAAGGAAAATACCTGCAATCG 707
Query 541 ATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTGCTTTTGCTGGGCTTGAG 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 708 ATTCTTGAAAAAGCTTGCAAGGCCTTTGACGAGCAAGCTGCTACTTTTGCTGGACTTGAG 767
Query 601 GCTGCTAGAGAAGAGCTTTCAGATCTAGCTATCAAGGTCTCTAATAGCTCTCAAGGAACA 660
|||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 768 GCTGCTAGGGAAGAGCTATCAGAGCTAGCCATCAAAGTCTCCAATAGCTCTCAAGGAACA 827
Query 661 ACAGTCCCGTACTTCGATGCAACAAAGATGATGATGATGCCATCTTTGTCCGAGCTTGCA 720
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 828 TCAGTCCCGTACTTCGATGCAACAAAGATGATGATGATGCCATCGTTGTCAGAGCTTGCA 887
Query 721 GTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGCTCTCTAACT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 888 GTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGCTCTCTGACT 947
Query 781 TCCATCACTA-ATGGGAGCTCGATATCTGCTGCATCGATGAAGAAGCGGCAACGTGGTGA 839
|||||||| | |||||||||| |||||||||||||| ||||||||||| |||||||| ||
Sbjct 948 TCCATCAC-ACATGGGAGCTCTATATCTGCTGCATCAATGAAGAAGCGTCAACGTGGAGA 1006
Query 840 CAATTTGGGCGTCGGGTATGAATCGGGATGGATTATGCCTAGTAGTACCATTGGATAA 897
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1007 CAATTTGGGCGTAGGGTATGAATCAGGCTGGATTATGCCTAGTAGCACCATTGGATAA 1064
> AT4G13640.2 | Symbols: UNE16 | Homeodomain-like superfamily protein
| chr4:7936606-7938645 REVERSE LENGTH=1294
Length=1294
Score = 654 bits (354), Expect = 0.0
Identities = 648/784 (83%), Gaps = 43/784 (5%)
Strand=Plus/Plus
Query 65 CTCTTGACGGAACTAATCTTCCCGGCGACGCTTGTTTGGTTTTAACCACTGACCCTAAAC 124
||| ||||||||| ||||||||| |||||||||| |||| ||||||||||||| || |
Sbjct 202 CTC-TGACGGAACCAATCTTCCCATCGACGCTTGTCTGGTCCTAACCACTGACCCCAAGC 260
Query 125 CTCGTCTCCGGTGGACAACTGAGCTCCATGAGAGATTCGTTGACGCTGTTACCCAGCTCG 184
|||| || || ||||| ||||||||||||| |||||||||||||| || || |||||||
Sbjct 261 CTCGCCTTCGTTGGACCTCTGAGCTCCATGAAAGATTCGTTGACGCCGTCACTCAGCTCG 320
Query 185 GTGGTCCTGACAAAGCGACGCCCAAAACTATCATGAGAACAATGGGAGTGAAGGGTCTCA 244
| || || |||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 321 GCGGACCCGACAAAGCAACGCCTAAAACTATAATGAGAACAATGGGAGTGAAGGGTCTCA 380
Query 245 CTCTCTACCACCTCAAATCACATCTTCAGAAATTCCGACTAGGG-AGACAAGCTGGCAAA 303
|||| ||||| |||||||| ||||||||||||||||| || ||| || ||| || | |||
Sbjct 381 CTCTTTACCATCTCAAATCTCATCTTCAGAAATTCCG-CTTGGGGAGGCAATCTTGTAAA 439
Query 304 GAATCAACTGAGAACTCTAAGGATGCTTCTTGTGTTGGGGAGAGTCAGGACACAGGTTCA 363
||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 440 GAATCAATTGACAACTCTAAGGATGTTTCTTGTGTTGCGGAGAGTCAGGACACTGGTTCA 499
Query 364 TCTTCAACATCATCATTGAGAATGG-TGCAGCAGGAGCAGAACGAGGGTTACCAAGTCAC 422
|||||||||||||| || ||| ||| ||| || || ||||||||| ||||||| |||||
Sbjct 500 TCTTCAACATCATCCTTAAGATTGGCTGCT-CAAGAACAGAACGAGAGTTACCAGGTCAC 558
Query 423 TGAAGCTCTACGTGCTCAGATGGAAGTCCAAAGAAAACTACATGAGCAATTGGAGCATGG 482
||||||| | ||||| ||||||||||||||||||| |||||| |||||| | ||| ||
Sbjct 559 TGAAGCTTTGCGTGCCCAGATGGAAGTCCAAAGAAGACTACACGAGCAACTAGAGTATAC 618
Query 483 GCAGGTGCAACGGAGACTCCAGCTAAGGATAGAGGCACAAGGAAAGTACCTTCAATCGAT 542
|||||||||| || |||||||| ||||||| ||||||||||| |||||||| ||||| ||
Sbjct 619 GCAGGTGCAAAGGCGACTCCAGTTAAGGATCGAGGCACAAGGGAAGTACCTGCAATCAAT 678
Query 543 TCTTGAAAAAGCTTGCAAGGCCTTT-GACGAGCAAGCTGCTGCTTTTGCTGGGCTT-GAG 600
||| || |||||||||||||| | | || |||||||||| ||| ||||||||| || |||
Sbjct 679 TCTAGAGAAAGCTTGCAAGGC-TATAGAGGAGCAAGCTGTTGCATTTGCTGGG-TTAGAG 736
Query 601 GCTGCTAGAGAAGAGCTTTCAGATCTAGCTATCAAGGTCTC--T-A--A-TAGCT-CTCA 653
|| |||||||||||||||||||| ||||| || |||| ||| | | | | | | | ||
Sbjct 737 GCAGCTAGAGAAGAGCTTTCAGAGCTAGCCATAAAGGCCTCCATCACCAATGGGTGC-CA 795
Query 654 AGGAACAACA-GTCCCGTACTTCGATGCAAC-AAAGATGATGATGATGCCATCTTTGTCC 711
|||||||||| | | | |||||| |||| ||| |||||||| | ||||| || |||
Sbjct 796 AGGAACAACAAG-CAC---CTTCGACACAACCAAA-ATGATGAT--T-CCATCCTTATCC 847
Query 712 GAGCTTGCAGTAGCAATAGACAACAAAAACAACATCACAACCAACTGTTCAGTAGAAAGC 771
|||||||||||||||||||| || ||| | ||||| ||||||| ||| |||
Sbjct 848 GAGCTTGCAGTAGCAATAGAG--CA----CAAGA--ACAAC----TGTTCAGCAGAGAGC 895
Query 772 TCTCTAACTTCCATCACTAATGGGA-GCTC-GATATCTGCTGCATCGATGAAGAAGCGGC 829
||||| ||||||| |||| | ||| | || | |||| ||||| | |||||||||| | |
Sbjct 896 TCTCTGACTTCCAGCACTG-TAGGAAG-TCCGGTATCAGCTGCGTTGATGAAGAAGAGAC 953
Query 830 AACG 833
||||
Sbjct 954 AACG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5