BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319113
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55620.1 | Symbols: emb1624 | Translation initiation factor ... 497 4e-140
> AT3G55620.1 | Symbols: emb1624 | Translation initiation factor
IF6 | chr3:20634202-20636506 FORWARD LENGTH=1088
Length=1088
Score = 497 bits (269), Expect = 4e-140
Identities = 467/554 (84%), Gaps = 48/554 (9%)
Strand=Plus/Plus
Query 1 ATGGCAACTCGTCTTCGGTTTGAGAACAGACCT--GACA-TTGGTGTCTTCTCCAAACTC 57
||||| |||||||||| ||||||||||| | || || | |||||||||| |||||||||
Sbjct 157 ATGGCGACTCGTCTTCAGTTTGAGAACA-A-CTGCGA-AGTTGGTGTCTTTTCCAAACTC 213
Query 58 ACTAATGCCTATTGCTTAGTCGCTATAGGTGGCTCTGAGAACTTTTACA--GC-----A- 109
||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 214 ACTAATGCCTATTGCTTAGTCGCTATAGGAGGCTCTGAGAACTTTTACAGTGCTTTTGAG 273
Query 110 -C--A--T-GC--ATGTTATCCCTATTGTTAAGACATCTATTGGTGGAATAC-AA--A-- 156
| | | || |||||||||||||||||||||| |||||||| |||| || || |
Sbjct 274 TCGGAGTTAGCAGATGTTATCCCTATTGTTAAGACCTCTATTGGAGGAACACGAATTATT 333
Query 157 ----------------GAAACAAAAATGGGCTTCTTGTGCCTCATACAACCACTGACC-A 199
||||||| |||||||||||||| ||||||||||| ||||||| |
Sbjct 334 GGGCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTGTACCTCATACAACAACTGACCAA 393
Query 200 -AGCTTCAACACTTGAGGAACAGTCTACCTGATCAAGTTGTGGTCCAGAGAATCGATGAA 258
||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 394 GAGCTTCAACACTTAAGGAACAGTCTACCTGATCAAGTTGTGGTCCAGCGAATTGATGAA 453
Query 259 CGTCTCTCTGCTCTTGGAAATTGCATTGCCTGCAATGACCATGTTGCTCTTGCGCACACT 318
||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |||||
Sbjct 454 CGTCTGTCTGCTCTTGGAAATTGCATTGCCTGCAATGACTATGTAGCTCTTGCCCACACC 513
Query 319 GATCTTGACAAGGAAACTGAGGAAATAATAATAGCCGATGTTCTTGGTGTTGAAGTTTTC 378
|||||||| |||||||| |||||||||||| || ||||| ||||| ||||||||||||
Sbjct 514 GATCTTGATAAGGAAACCGAGGAAATAATA---GCGGATGTACTTGGCGTTGAAGTTTTC 570
Query 379 CGTCAGACAATTGCAGGCAATATTCTTGTAGGCAGCTATTGTGCCTTGTCCAACACCGGT 438
|||||||||||||||||||| ||||| || ||||| || |||||| | ||||||| |||
Sbjct 571 CGTCAGACAATTGCAGGCAACATTCTCGTGGGCAGTTACTGTGCCCTATCCAACAAAGGT 630
Query 439 GGAATTGTCCATCCTCAAACCTCAGTGGAAGATTTGGATCAACTCTCAACACTTGTTCAA 498
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 631 GGAATGGTCCATCCTCACACCTCAGTGGAAGACTTGGAAGAACTCTCAACACTTCTTCAA 690
Query 499 GTCCCTCTGGTTGC 512
|||||||| |||||
Sbjct 691 GTCCCTCTCGTTGC 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5