BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319134

Length=1074
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:1...  62.1    1e-08


> AT3G28330.1 | Symbols:  | F-box family protein-related | chr3:10586566-10587712 
REVERSE LENGTH=1050
Length=1050

 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  455  TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACA  490
            ||||||||||||||||||||||||||||| ||||||
Sbjct  401  TATATTCATCTGAGACAGGCTTGTGGAGTCTCAACA  436



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 52610171160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5