BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319165 Length=1524 Score E Sequences producing significant alignments: (Bits) Value AT3G24600.1 | Symbols: | Late embryogenesis abundant protein, ... 2246 0.0 > AT3G24600.1 | Symbols: | Late embryogenesis abundant protein, group 2 | chr3:8972195-8974867 REVERSE LENGTH=1521 Length=1521 Score = 2246 bits (1216), Expect = 0.0 Identities = 1425/1527 (93%), Gaps = 9/1527 (1%) Strand=Plus/Plus Query 1 ATGAAGATGTACCCAAAATCTGACTCAGACATCACAAGCCTCGACCTATCATCACCAAAA 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGAAGATGTACCCAAAATCTGACTCAGACGTCACAAGCCTCGACCTATCATCACCAAAA 60 Query 61 CTTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCTTCGGTGGCA 120 | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 CGTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCCTCGGTGGCA 120 Query 121 CTGACGACTCATCAGACCACTCCCACCGAGTCGCCATCACACCCATCGTTTGCTAGCCGC 180 ||||| |||||||| ||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 121 CTGACTACTCATCAAACCACTCCCACAGAGTCGCCGTCACACCCATCAATTGCTAGCCGG 180 Query 181 GTATCCAACAACGGTGGTGGAGGTTTCCGGTGGAAAGGACGGAGGAAATATCACGGTGGA 240 |||||||| ||||||||| |||||||||||||| |||||||||||||||||||| || Sbjct 181 GTATCCAATGGCGGTGGTGGCGGTTTCCGGTGGAAGGGACGGAGGAAATATCACGGCGGG 240 Query 241 AGATGGTGGCCGGCTGATAAGGAGGATGATGCTGATGATGGACGGTACGAGGATCTTTAT 300 | |||||||||||||||||||||||| | | || ||||||||||||||||||||||||| Sbjct 241 ATATGGTGGCCGGCTGATAAGGAGGA--A-GGTGGTGATGGACGGTACGAGGATCTTTAT 297 Query 301 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 357 Query 361 TTGAGTATCTTTTTTCTTCTATGTTCTGTTCTCTTTGGTGTTTCTCAATCTT-TCCCTCC 419 |||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| ||| Sbjct 358 TTGAGTATCTTTTTTCTTCTTTGTTCTGTTCTCTTTGGTGCTTCTCAATCTTCTCC-TCC 416 Query 420 AATCGTCTACATCAAGGGTGTGAATGTGCA-AAGTTTTTACTACGGAGAAGGTTCAGATA 478 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | Sbjct 417 AATCGTCTACATCAAGGGTGTGAATGTG-AGAAGTTTTTACTACGGAGAAGGTTCAGACA 475 Query 479 GTACAGGAGTGCCAACAAAGATCATGAACTTTAAATGTTCAGTGGACATCACAACACACA 538 ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 476 ATACAGGAGTTCCAACAAAGATCATGAACGTTAAATGTTCAGTGGTGATCACAACACACA 535 Query 539 ATCCTTCTACATTATTCGGCATTCATGTCAGCTCCACTACCATCAACCTCGTCTACTCTC 598 |||||||||||||||||||||| ||||| ||||||||| || ||| |||| | ||||||| Sbjct 536 ATCCTTCTACATTATTCGGCATCCATGTTAGCTCCACTGCCGTCAGCCTCATATACTCTC 595 Query 599 GTCAATTCACGCTTGCGA-TCGCGCAGCTGAAGAGTTATTATCAACCAAAACTAAGCAAC 657 |||||||||| ||||||| | |||| ||||||||||||| | |||||||||| ||||||| Sbjct 596 GTCAATTCACACTTGCGAAT-GCGCGGCTGAAGAGTTATCACCAACCAAAACAAAGCAAC 654 Query 658 CACACATCTAGGATCAACCTTGTTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 717 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 655 CACACATCTAGGATCAACCTTATTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 714 Query 718 TTAGTTGCTTCAGACCATATTGGTGGAGTTCCTGTTCATACTCCAAACTACACCATTCTC 777 ||||||||||| ||| | | |||||||||||| |||||||| |||||||||||||||||| Sbjct 715 TTAGTTGCTTCGGACAACAGTGGTGGAGTTCCCGTTCATACCCCAAACTACACCATTCTC 774 Query 778 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCCAATGGAACAAGCGGTATGGGATTC 837 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 775 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCTAATGGGACAAGCGGTATGGGATTT 834 Query 838 CGATGGAAAGGAAGCTCCCGGAGAAGTAATATGTATTGGCCGGAGAAGCCTTACACGATT 897 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 835 CGATGGAAAGGAAGCTCCCGGAGGAGTAATATGTATTGGCCGGAGAAGCCATACACGATT 894 Query 898 AATGAAGATGAAGTTTATGATGATAACAGAGGATTATCGGTGGGACAATGCAGAGCTGTT 957 ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 895 AATGAAGATGAGGTTTATGATGATAACAGAGGATTATCAGTGGGACAATGTAGAGCGGTT 954 Query 958 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTCTGCTCTGTTTTGTGGGGAGCT 1017 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 955 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTTTGCTCTGTTTTGTGGGGAGCT 1014 Query 1018 TCTCATCCTTTCTCTCCTATTGTCTCTGTCAAGAGCTTTAACATCCATAGCTTTTATTAC 1077 |||||||||||||||||||| ||||| || |||||| || ||||||||||||| |||||| Sbjct 1015 TCTCATCCTTTCTCTCCTATCGTCTCCGTTAAGAGCGTTGACATCCATAGCTTCTATTAC 1074 Query 1078 GGAGAAGGAATAGACAGAACAGGAGTTGCTACCAAGATTCTGAGCTTTAACAGCTCGGTG 1137 |||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 1075 GGAGAAGGAATAGACAGAACAGGAGTCGCCACCAAGATTCTAAGCTTTAACAGTTCAGTG 1134 Query 1138 AAGGTGACAATAGATAGTCCTGCGCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1197 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1135 AAGGTGACAATAGACAGTCCTGCTCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1194 Query 1198 AAACTCACCTTCTCTGCTCTCACACTCGCCACTGGTCAGCTTAAGAGCTATTACCAGCCA 1257 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1195 AAACTCACTTTCTCTGCTCTCACACTCGCCACTGGTCAGCTAAAGAGCTATTACCAACCA 1254 Query 1258 AGAAAGAGCAAGCACATAGCCATTGTAAAGCTCACTGGCGCCGAAGTTCCTTTGTATGGA 1317 |||||||| ||||||||| | |||||||||||||||||||| || |||||| |||||||| Sbjct 1255 AGAAAGAGTAAGCACATATCAATTGTAAAGCTCACTGGCGCAGAGGTTCCTCTGTATGGA 1314 Query 1318 GCAGGACCACACTTAGCTGCCTCTGACAAGAAGGGAAAAGTTCCAGTGAAGTTGGAGTTT 1377 ||||||||||||||||| || || ||||||||||| ||||||||||||||| |||||||| Sbjct 1315 GCAGGACCACACTTAGCAGCTTCCGACAAGAAGGGTAAAGTTCCAGTGAAGCTGGAGTTT 1374 Query 1378 GAGATCCGATCGCGAGGTAATTTATTGGGGAAGCTGGTCAAGTCGAAGCACGTGAATCAC 1437 |||||| |||| |||||||| ||||||||||||| |||||||||||||||| ||||||| Sbjct 1375 GAGATCAGATCAAGAGGTAATCTATTGGGGAAGCTAGTCAAGTCGAAGCACGAGAATCAC 1434 Query 1438 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCAGTCAT 1497 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1435 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCACTCAC 1494 Query 1498 AAGACCTGTAAACTTGTTACCAAGTAA 1524 |||||||||||||| |||||||||||| Sbjct 1495 AAGACCTGTAAACTCGTTACCAAGTAA 1521 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75200416410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5