BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319165
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24600.1 | Symbols: | Late embryogenesis abundant protein, ... 2246 0.0
> AT3G24600.1 | Symbols: | Late embryogenesis abundant protein,
group 2 | chr3:8972195-8974867 REVERSE LENGTH=1521
Length=1521
Score = 2246 bits (1216), Expect = 0.0
Identities = 1425/1527 (93%), Gaps = 9/1527 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGTACCCAAAATCTGACTCAGACATCACAAGCCTCGACCTATCATCACCAAAA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGATGTACCCAAAATCTGACTCAGACGTCACAAGCCTCGACCTATCATCACCAAAA 60
Query 61 CTTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCTTCGGTGGCA 120
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGTCCTACTTACTACGTTCAAAGCCCATCACGTGACTCCGACAAGTCTTCCTCGGTGGCA 120
Query 121 CTGACGACTCATCAGACCACTCCCACCGAGTCGCCATCACACCCATCGTTTGCTAGCCGC 180
||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 121 CTGACTACTCATCAAACCACTCCCACAGAGTCGCCGTCACACCCATCAATTGCTAGCCGG 180
Query 181 GTATCCAACAACGGTGGTGGAGGTTTCCGGTGGAAAGGACGGAGGAAATATCACGGTGGA 240
|||||||| ||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 181 GTATCCAATGGCGGTGGTGGCGGTTTCCGGTGGAAGGGACGGAGGAAATATCACGGCGGG 240
Query 241 AGATGGTGGCCGGCTGATAAGGAGGATGATGCTGATGATGGACGGTACGAGGATCTTTAT 300
| |||||||||||||||||||||||| | | || |||||||||||||||||||||||||
Sbjct 241 ATATGGTGGCCGGCTGATAAGGAGGA--A-GGTGGTGATGGACGGTACGAGGATCTTTAT 297
Query 301 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGGACAACAGAGGAGTCTCCATTGTTACTTGTAGACTTATTTTGGGAGTTGTTGCGACA 357
Query 361 TTGAGTATCTTTTTTCTTCTATGTTCTGTTCTCTTTGGTGTTTCTCAATCTT-TCCCTCC 419
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||
Sbjct 358 TTGAGTATCTTTTTTCTTCTTTGTTCTGTTCTCTTTGGTGCTTCTCAATCTTCTCC-TCC 416
Query 420 AATCGTCTACATCAAGGGTGTGAATGTGCA-AAGTTTTTACTACGGAGAAGGTTCAGATA 478
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
Sbjct 417 AATCGTCTACATCAAGGGTGTGAATGTG-AGAAGTTTTTACTACGGAGAAGGTTCAGACA 475
Query 479 GTACAGGAGTGCCAACAAAGATCATGAACTTTAAATGTTCAGTGGACATCACAACACACA 538
||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 476 ATACAGGAGTTCCAACAAAGATCATGAACGTTAAATGTTCAGTGGTGATCACAACACACA 535
Query 539 ATCCTTCTACATTATTCGGCATTCATGTCAGCTCCACTACCATCAACCTCGTCTACTCTC 598
|||||||||||||||||||||| ||||| ||||||||| || ||| |||| | |||||||
Sbjct 536 ATCCTTCTACATTATTCGGCATCCATGTTAGCTCCACTGCCGTCAGCCTCATATACTCTC 595
Query 599 GTCAATTCACGCTTGCGA-TCGCGCAGCTGAAGAGTTATTATCAACCAAAACTAAGCAAC 657
|||||||||| ||||||| | |||| ||||||||||||| | |||||||||| |||||||
Sbjct 596 GTCAATTCACACTTGCGAAT-GCGCGGCTGAAGAGTTATCACCAACCAAAACAAAGCAAC 654
Query 658 CACACATCTAGGATCAACCTTGTTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 655 CACACATCTAGGATCAACCTTATTGGCTCCAAGGTTCCACTATATGGAGCAGGAGCCGAG 714
Query 718 TTAGTTGCTTCAGACCATATTGGTGGAGTTCCTGTTCATACTCCAAACTACACCATTCTC 777
||||||||||| ||| | | |||||||||||| |||||||| ||||||||||||||||||
Sbjct 715 TTAGTTGCTTCGGACAACAGTGGTGGAGTTCCCGTTCATACCCCAAACTACACCATTCTC 774
Query 778 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCCAATGGAACAAGCGGTATGGGATTC 837
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 775 AGTGAGTCACGTCTCTCCTCTTCGAGCCGTACCTCTAATGGGACAAGCGGTATGGGATTT 834
Query 838 CGATGGAAAGGAAGCTCCCGGAGAAGTAATATGTATTGGCCGGAGAAGCCTTACACGATT 897
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 835 CGATGGAAAGGAAGCTCCCGGAGGAGTAATATGTATTGGCCGGAGAAGCCATACACGATT 894
Query 898 AATGAAGATGAAGTTTATGATGATAACAGAGGATTATCGGTGGGACAATGCAGAGCTGTT 957
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 895 AATGAAGATGAGGTTTATGATGATAACAGAGGATTATCAGTGGGACAATGTAGAGCGGTT 954
Query 958 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTCTGCTCTGTTTTGTGGGGAGCT 1017
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 955 TTGGTAATATTAGGTACTGTGGTTGTGTTCTCTGTTTTTTGCTCTGTTTTGTGGGGAGCT 1014
Query 1018 TCTCATCCTTTCTCTCCTATTGTCTCTGTCAAGAGCTTTAACATCCATAGCTTTTATTAC 1077
|||||||||||||||||||| ||||| || |||||| || ||||||||||||| ||||||
Sbjct 1015 TCTCATCCTTTCTCTCCTATCGTCTCCGTTAAGAGCGTTGACATCCATAGCTTCTATTAC 1074
Query 1078 GGAGAAGGAATAGACAGAACAGGAGTTGCTACCAAGATTCTGAGCTTTAACAGCTCGGTG 1137
|||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||
Sbjct 1075 GGAGAAGGAATAGACAGAACAGGAGTCGCCACCAAGATTCTAAGCTTTAACAGTTCAGTG 1134
Query 1138 AAGGTGACAATAGATAGTCCTGCGCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1197
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 AAGGTGACAATAGACAGTCCTGCTCCTTACTTTGGCATCCATGTCTCTTCTTCTACCTTC 1194
Query 1198 AAACTCACCTTCTCTGCTCTCACACTCGCCACTGGTCAGCTTAAGAGCTATTACCAGCCA 1257
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1195 AAACTCACTTTCTCTGCTCTCACACTCGCCACTGGTCAGCTAAAGAGCTATTACCAACCA 1254
Query 1258 AGAAAGAGCAAGCACATAGCCATTGTAAAGCTCACTGGCGCCGAAGTTCCTTTGTATGGA 1317
|||||||| ||||||||| | |||||||||||||||||||| || |||||| ||||||||
Sbjct 1255 AGAAAGAGTAAGCACATATCAATTGTAAAGCTCACTGGCGCAGAGGTTCCTCTGTATGGA 1314
Query 1318 GCAGGACCACACTTAGCTGCCTCTGACAAGAAGGGAAAAGTTCCAGTGAAGTTGGAGTTT 1377
||||||||||||||||| || || ||||||||||| ||||||||||||||| ||||||||
Sbjct 1315 GCAGGACCACACTTAGCAGCTTCCGACAAGAAGGGTAAAGTTCCAGTGAAGCTGGAGTTT 1374
Query 1378 GAGATCCGATCGCGAGGTAATTTATTGGGGAAGCTGGTCAAGTCGAAGCACGTGAATCAC 1437
|||||| |||| |||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1375 GAGATCAGATCAAGAGGTAATCTATTGGGGAAGCTAGTCAAGTCGAAGCACGAGAATCAC 1434
Query 1438 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCAGTCAT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1435 GTATCATGCTCTTTCTTCATCTCCTCCTCCAAGACTTCCAAACCCATAGAATTCACTCAC 1494
Query 1498 AAGACCTGTAAACTTGTTACCAAGTAA 1524
|||||||||||||| ||||||||||||
Sbjct 1495 AAGACCTGTAAACTCGTTACCAAGTAA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5