BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319176
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23... 625 4e-178
> AT3G62850.1 | Symbols: | zinc finger protein-related | chr3:23237487-23239155
REVERSE LENGTH=1419
Length=1419
Score = 625 bits (338), Expect = 4e-178
Identities = 939/1216 (77%), Gaps = 93/1216 (8%)
Strand=Plus/Plus
Query 13 GCGGCGGCGCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATGAAGGACTGT 72
|||||| |||| | ||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct 16 GCGGCGAAGCCTGAGTACGCGAGAGCTAAAATAGCTGTGTGGTGGGACATGAAGGACTGT 75
Query 73 CCGATTCCCGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAA- 131
|||||||| ||||||||||| |||| || |||||||||||| ||||||| |||||||||
Sbjct 76 CCGATTCCAGAGGGTTATGATGCTCGTCTGGTCCGTCCGAGCATAGAAGCGGCGTTCAAT 135
Query 132 GAAACTAGGCTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCAAACACAAACCCC 191
||| |||||||||||||||||| |||||||||| | |||||| ||||||| | |||||||
Sbjct 136 GAA-CTAGGCTACTCTGGTCCTATCTCCATCACCGGCTATGGTGACCAAAGAGAAACCCC 194
Query 192 T-GATAATCTCCTGCGAGGGCTCTCTTCAACTGGAGTC-CATGTTGCACATGCCATTACC 249
| | | | ||||||||||||||||||| || |||||| | ||| ||||| ||| |||
Sbjct 195 TTG-TCAGATCCTGCGAGGGCTCTCTTCCACCGGAGTCGC-TGTAGCACAAATCAT-ACC 251
Query 250 -GAAAGCACATGCGCTCTCATGTATTCG-GATATGGTGGAATGGCGACG-TCATATTCCT 306
||||||| |||| | |||||||||||| | |||| |||| |||||| | || || ||||
Sbjct 252 CGAAAGCAGATGCTCACTCATGTATTCGAG-TATGCTGGAGTGGCGA-GATCTTAATCCT 309
Query 307 CCTCCGGCGACAATGATGTTCATATCCAATCAGGTGG-ACCATGTCTTCTCATTGG-ATC 364
|||||||| ||||||||| || ||||| ||||| ||| | ||||||||| | |||| |||
Sbjct 310 CCTCCGGCTACAATGATGCTCGTATCCGATCAG-TGGCAGCATGTCTTCGC-TTGGGATC 367
Query 365 TGGCCCGGCTACAACAAGAGACGCAATACAACCTCTTTCTGGCTTACTCGGTT-AGTTCT 423
|| |||| ||||||||| | ||| |||||||||| ||||||||||| || | || ||
Sbjct 368 TGTCCCGTCTACAACAACACACGAAATACAACCTTTTTCTGGCTTATTCAACTGAGC-CT 426
Query 424 AAAGCCA--TACCAGCTCTTGAGAC-TTCTGCAGAGTGGCGCTGGA-ACAATTTACTAAA 479
|| | | | || || ||||| || || ||||||| ||||| | ||||||||
Sbjct 427 TTCGC-AGGTTCG-GCACT-GAGACCTTGTGGAGAGTGGATCTGGAGA-AATTTACT--- 479
Query 480 GTCGAAGACGAAGAAGACCAGAGTGGTTAAA-ATATA-TGAAGAAGAAGAAAGTGACCGT 537
| || ||| || ||| | | | ||| | | | | || || || || |||| ||
Sbjct 480 -T-GA-GACCAA-AAGGG-A-ATTTGTTCAGGACA-AGTGCAGCAGCAGTT-GTGAG-GT 530
Query 538 G-C-C--ATGTTTTATTGTAAATCGTGCGATTTCGATTGCCAAAGCTTG-AGGGAACTCA 592
| | ||||||||||| ||||| ||| || | | |||||||| || |||| |||
Sbjct 531 ATCTCCCATGTTTTATTGCAAATCTTGCTCTTACCAGGGCCAAAGCGTGGAGGGTT-TCA 589
Query 593 GGAAGCATCTCTCGAGTAGATATCATGCAATGGGAGAACTTTTATGCCCTACTGC-TACA 651
||| |||| |||||||| || | |||||| || ||| || | || || | | | ||
Sbjct 590 GGAGGCATGTCTCGAGTGGAAAGCATGCAGTGAAAGAGGTTACAAACCGTA-TACATCCA 648
Query 652 GAAATTT-CTCCTGTAACGATGAAGTGGGGAAGGAACTTCCCGGCCAAGCCTGAATACGC 710
||| || || | | |||| || ||||| || ||||| | | || |||||||| |||||
Sbjct 649 GAACTTGACTATT-TGACGAGGACGTGGGCAAAGAACTACACTGCGAAGCCTGAGTACGC 707
Query 711 CACGGCTAAAATTCTGGTGTTGTGGGACATTGT-GGACTGTCCGATTCCCGAGGGTTATG 769
|| ||| ||| |||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 708 GACAGCTCCAATAGTGGTGTGGTGGGACAT-GAAGGACTGTCCGATTCCAGAGGGTTATG 766
Query 770 AAGTTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 829
| | || || ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 767 ATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGGCTACTCTGGTC 826
Query 830 CTGTCTCCATCACCGCCTATGGCGACCA-ATCACAAACCCCTGATCATC-TCCTGCGAGG 887
||||||||||||||| | ||||||||| | || ||||||||||||| | |||||||||
Sbjct 827 CTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-CATCCTGCGAGA 884
Query 888 GCTCTCTTCCACTGGAGTCGCTGTTTCACATGCCATT-ACCGAAGTCAGATACAAAAGAA 946
|||||||||||||||||||| | || ||||| |||| || ||||||| ||||| | |
Sbjct 885 GCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAAGTCATATACAGTCGCA 943
Query 947 TGTTT-TCCGATTTGATTC-GATGGCAATACCT--TAATCCTCCTCCAGCTACAATCATG 1002
||||| | || ||| | | ||| || | || |||||||||||| ||||||||||||
Sbjct 944 TGTTTATAA-ATATGAAGCAG-TGG-AA-AGCTCGTAATCCTCCTCCGGCTACAATCATG 999
Query 1003 CTCATATCCGATCATATAGAGGATTAC-TTCTCAACTTCTGTT-GCCAGTCTT-CAACAA 1059
|||||||||||| | | | | || | ||| || || | | ||| | ||| | ||||
Sbjct 1000 CTCATATCCGATGGTGTGGTG-ATGATGTTCGAAAATT-TAATCGCC-GACTTACTACAA 1056
Query 1060 TGTTGTATTAAATATAAATACAACATGTTCCTGGCTTATTCATTTAGGCCT-ACCAAAAT 1118
| | | || || || | | | ||| |||||||||| | |||||| || |||||
Sbjct 1057 -GA-G-ACGAAGTACAA---C--CTTTTTC-TGGCTTATTCGTACAGGCCTTAC-AAAAT 1106
Query 1119 GT-TAGCCCT-CGTCACCTCTGCAGAGTGGCTCTGGGAAAGCTTACT-G--GAAGGTGTT 1173
|| | | ||| | |||| |||||||||||||| ||| |||||||||| | | |||||||
Sbjct 1107 GTCT-GTCCTGC-TCACTTCTGCAGAGTGGCTTTGGAAAAGCTTACTTGTTGCAGGTGTT 1164
Query 1174 TATTTGTCCTCCTCTC 1189
| ||| || |||||||
Sbjct 1165 T-TTT-TC-TCCTCTC 1177
Score = 302 bits (163), Expect = 8e-81
Identities = 330/407 (81%), Gaps = 26/407 (6%)
Strand=Plus/Plus
Query 21 GCCTAAATACGCGACAGCTGAAATAGCGGTGTGGTGGGACATGAAGGACTGTCCGATTCC 80
|||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 696 GCCTGAGTACGCGACAGCTCCAATAGTGGTGTGGTGGGACATGAAGGACTGTCCGATTCC 755
Query 81 CGAGGGTTATGAAGCTCATCGGGTCCGTCCGAGTATAGAAGGGGCGTTCAAGAAACTAGG 140
||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 756 AGAGGGTTATGATGCTCGTCAGGTCCGTCCGAGTTTAGAAGGGGCGTTCAAGAAACTAGG 815
Query 141 CTACTCTGGTCCTGTCTCCATCACTGCCTATGGCGACCA-AACACAAACCCCTGATAATC 199
|||||||||||||||||||||||| | | ||||||||| |||| ||||||||||| | |
Sbjct 816 CTACTCTGGTCCTGTCTCCATCACCGGATGTGGCGACCACAACA-AAACCCCTGATCA-C 873
Query 200 -TCCTGCGAGGGCTCTCTTCAACTGGAGTCCATGTTGCACATGCCATT-ACCGAAAG-CA 256
||||||||| ||||||||| ||||||||| || |||||||| |||| || ||| | ||
Sbjct 874 ATCCTGCGAGAGCTCTCTTCCACTGGAGTCGATCTTGCACATTCCATCGAC-GAA-GTCA 931
Query 257 CATGC-GCTCTCATGTATTCGGA-TATGGTGGAATGGCGA-CGTCATATTCCTCCTCCGG 313
|| | | || ||||| || | |||| | | ||| | | || || |||||||||||
Sbjct 932 TATACAG-TCGCATGT-TTATAAATATGAAGCAGTGGAAAGC-TCGTAATCCTCCTCCGG 988
Query 314 CGACAATGATGTTCATATCCAATCAG-GTGGACCATG-TCTTCTCA--TTGGATCTGGCC 369
| ||||| ||| |||||||| || | |||| ||| | ||| | || ||| | ||
Sbjct 989 CTACAATCATGCTCATATCCGATG-GTGTGGTG-ATGATGTTCGAAAATTTAATC-G-CC 1044
Query 370 CGGCT-ACAACAAGAGACGCAA-TACAACCTCTTTCTGGCTTACTCG 414
| || || |||||||||| || |||||||| ||||||||||| |||
Sbjct 1045 -GACTTACTACAAGAGACG-AAGTACAACCTTTTTCTGGCTTATTCG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5