BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319178
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58940.1 | Symbols: CRCK1 | calmodulin-binding receptor-like... 2294 0.0
> AT5G58940.1 | Symbols: CRCK1 | calmodulin-binding receptor-like
cytoplasmic kinase 1 | chr5:23798562-23800823 FORWARD LENGTH=1617
Length=1617
Score = 2294 bits (1242), Expect = 0.0
Identities = 1364/1425 (96%), Gaps = 0/1425 (0%)
Strand=Plus/Plus
Query 1 ATGCCAATGAGGAGCAAAACCCCAACGCCTCTCCGCTTCTCAAATGGAAAGCATCAAAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 98 ATGCCAATGAGGAGCAAAACCCCAACGCCTCTCCGCTTCTCAAATGGAAAGCATCAGAGA 157
Query 61 GCTGATTCTGACTATAGTTGGAGTGATGTAGGTACTGGGGAGAAGGCGAGGAATGTCTCC 120
| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 158 GATGATTCTGAGTATAGTTGGACTGATGTAGGTACTGGGGAGAAGGCCAGGAATGTCTCC 217
Query 121 GTCCTCTGTGCCATCAGAAGGGCAGCTAAGAAAGTCTTTGCTATTATTTTCTTAGGACAA 180
|||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 218 GTCCTCGGTGCGATCAGAAGGGCAGCTAAGAAAGTCTTTGTTATTATTTTCTTAGGACAA 277
Query 181 CGAAAGTTCAAGCCAACAGAATGTAGATCTGATCCTGGAGAGAGCAGCACGCTTGACAGA 240
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 278 CGGAAGTTAAAGCCAACAGAATGTAGATCTGATCCTGGAGAGAGCAGCACGCACGACAGA 337
Query 241 GATTCTACATTATCAGGCTGGACTGGCTATTCATCACCAAGCTCTTTTGGAAGGTCAACA 300
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 338 GAATCTACATTATCAGGCTGGACTGGTTATTCATCACCAAGCTCCTTTGGAAGGTCAACA 397
Query 301 GAAAGAAAGATTTCAGGTCAATATCGTTTTTCTGGTTCAAGATTTCAAAGTCCTGGGAAA 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GAAAGAAAGGTTTCAGGTCAATATCGTTTTTCTGGTTCAAGATTTCAAAGTCCTGGGAAA 457
Query 361 GATTCTTCTTCTAGCAAAAGTTGGCACCAAGGCCCGGTAATATTTTCTTTTGTGGAGCTT 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 458 GATTCTTCTTCTAGCAAAAGTTGGCATCAAGGCCCGGTAATATTTTCTTTTGGGGAGCTT 517
Query 421 CAAAGGGCAACTGCAAATTTTTCATCGGTTCATCAAATTGGGGAAGGCGGTTTTGGAACT 480
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 518 CAAAGGGCAACCGCAAATTTTTCTTCGGTTCATCAAATTGGGGAAGGCGGTTTTGGAACT 577
Query 481 GTTTTTAAGGGAAAGCTTGATGATGGAACTATTGTTGCTATCAAGCGAGCCAGAAAGAAC 540
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 578 GTTTTTAAGGGAAAACTTGATGATGGAACTATTGTTGCTATCAAGCGTGCGAGAAAGAAC 637
Query 541 AACTATGACAAAAGCTGGTTGCTAGAGTTTAAGAATGAAATATACACATTGTCAAAGATT 600
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 638 AACTATGGCAAAAGCTGGTTGCTAGAGTTCAAGAATGAAATATACACATTGTCAAAGATT 697
Query 601 GAGCATATGAATTTGGTAAAGCTATATGGATTTCTTGAACATGGAGATGAAAAGGTTATT 660
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 698 GAGCATATGAATTTGGTAAAGCTGTATGGATTTCTTGAACATGGAGATGAAAAGGTTATT 757
Query 661 GTTGTTGAATATGTTGGCAATGGAAACCTACGAGAACATCTAGATGGTTTACGGGGTAAC 720
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 758 GTTGTTGAATATGTTGCCAATGGAAACCTACGAGAACATCTAGATGGTTTAAGGGGTAAC 817
Query 721 CGCCTTGAAATGGCAGAACGTCTTGAGATTGCGATTGATGTAGCTCATGCATTGACCTAT 780
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 818 CGCCTTGAAATGGCAGAACGTCTTGAGATTGCAATTGATGTGGCTCATGCATTGACCTAT 877
Query 781 TTGCACACATATACGGATACTCCAATAATACACAGAGACATTAAAGCCTCAAATATCCTC 840
|||||||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 878 TTGCACACATATACTGATAGTCCAATAATCCACAGAGACATTAAAGCATCAAATATCCTC 937
Query 841 ATTACGAATAAGCTTAGAGCCAAAGTGGCAGACTTTGGCTTTGCTCGTTTAGTTTCGGAA 900
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 938 ATCACGAATAAGCTTAGAGCCAAAGTGGCGGACTTTGGCTTTGCTCGTTTAGTGTCGGAA 997
Query 901 GATCTCGGGGCTACTCATATATCGACTCAGGTCAAAGGATCTGCAGGTTATGTGGATCCA 960
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 GATCTTGGGGCTACTCATATATCGACTCAGGTCAAAGGATCTGCAGGCTATGTGGATCCA 1057
Query 961 GATTACCTCAGGACGTTTCAACTAACCGACAAGAGTGACGTTTACTCTTTTGGTGTTTTG 1020
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1058 GATTACCTCAGGACGTTTCAACTAACTGACAAGAGCGACGTTTACTCTTTTGGTGTTTTG 1117
Query 1021 CTCATAGAGCTTCTCACTGGAAGACGTCCCATTGAGTTAAAGAGACCACGAAAAGACCGA 1080
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1118 CTCGTAGAGATTCTCACTGGAAGACGTCCCATTGAGTTAAAGAGACCACGAAAAGACAGA 1177
Query 1081 CTTACTGTTAAATGGGCATTGAGGAGACTCAAAGACGATGAAGCTGTTCTCATAATGGAT 1140
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CTCACGGTTAAATGGGCATTGAGGAGACTCAAAGACGATGAAGCTGTTCTCATAATGGAC 1237
Query 1141 CCATTTCTCAAGAGAAACCGAGCCGCCATTGAAGTGGCTGAGAAAATGCTGAGACTGGCG 1200
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1238 CCATTTCTCAAGAGAAACCGAGCCGCCATTGAAGTGGCTGAGAAGATGCTGAGACTTGCG 1297
Query 1201 AGCGAATGTCTTGCCCCGACGAGAGCTACACGTCCAGCTATGAAAGACATTGCGGAAAAG 1260
||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1298 AGCGAATGTGTTACCCCGACGAGAGCTACACGTCCAGCTATGAAAGGCATTGCGGAAAAG 1357
Query 1261 CTATGGGCTATAAGGAGAGAGATGAAGGAGACGATGATATGTTCCTCTGCCTCTAATTCT 1320
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1358 CTATGGGCTATAAGGAGAGAGATGAAGGAGACGATGATATGTTCATCTGCATCTAATTCT 1417
Query 1321 TCCTGTTCTTCAACAACACATAGCTTCATTGGTCGTGATTCAGACAGATTTGCGTTGCCG 1380
|| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1418 TCTTGTTCTTCAACAACACATAGCTTCATTGGTCGTGATTCAGACAGATATGCATTGCCG 1477
Query 1381 AGGATCGAAGACAACGAGAATAGCATTGAGTTACTCTCTCCTTGA 1425
||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 1478 AGGATTGAAGATAACGAGAATAGCATTGAGTAACTCTCTCCTTGA 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5