BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319187
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24790.1 | Symbols: | Protein kinase superfamily protein | ... 1696 0.0
AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protei... 176 4e-43
> AT3G24790.1 | Symbols: | Protein kinase superfamily protein
| chr3:9052982-9054531 FORWARD LENGTH=1106
Length=1106
Score = 1696 bits (918), Expect = 0.0
Identities = 1028/1083 (95%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 41 ATGAAGGTTCTTCGATGCCTGTTCCTTATAAGCAACCAAACTCACCTAAGAGAACAACAG 100
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGGTTCTTCGATGCCTGCTCCTTATAAGCAACCAAACTCACCTAAGAGAACAACAG 60
Query 101 GAGAAGTGGTGGCTAAGAATGCAAACGGGCCATCAAACAACATGGGGGCACGGATTTTCT 160
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 61 GAGAAGTGGTGGCTAAGAACGCAAACGGACCATCAAACAATATGGGGGCACGTATTTTCA 120
Query 161 CGTTCCGTGAGTTAGCCACCGCGACAAGGAATTTTCGACAAGAGTGCCTCATTGGCGAAG 220
||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 121 CGTTCCGTGAGCTAGCCACCGCGACAAAGAATTTTAGACAAGAGTGCCTCATTGGTGAAG 180
Query 221 GCGGGTTCGGGCGGGTTTACAAAGGAAAGCTCGAGAATCCGGCACAGGTCGTGGCAGTGA 280
| ||||||||| ||||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 181 GTGGGTTCGGGAGGGTTTACAAAGGAAAGCTTGAAAATCCAGCTCAGGTCGTGGCAGTGA 240
Query 281 AACAACTTGATAGGAATGGATTACAAGGACAAAGAGAGTTCTTGGTCGAGGTTTTGATGC 340
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 241 AACAACTTGATAGGAATGGATTACAAGGACAAAGAGAGTTCTTGGTCGAGGTCTTAATGC 300
Query 341 TTAGTCTTCTTCATCATACAAATCTTGTGAATCTTATCGGTTATTGCGCCGATGGAGACC 400
|||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TTAGTCTTCTACATCATAGGAATCTTGTGAATCTTATCGGTTATTGCGCTGATGGAGACC 360
Query 401 AAAGACTTCTTGTTTACGAGTATATGCCCCTTGGATCTCTAGAAGATCATCTCCTCGATC 460
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AAAGACTTCTTGTTTACGAGTATATGCCTCTTGGATCTCTAGAAGATCATCTCCTCGATC 420
Query 461 TTGAGCCGGGACAAAAACCACTAGACTGGAACACTCGTATTAAGATCGCTATAGGAGCGG 520
|||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 421 TTGAACCGGGACAAAAACCACTAGACTGGAACACTCGTATTAAGATTGCTTTAGGAGCAG 480
Query 521 CAAAAGGAATTGAGTATCTCCATGATGAGGCCGATCCTCCAGTGATTTACCGAGATCTTA 580
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 CAAAAGGAATTGAGTATCTCCATGATGAGGCTGATCCTCCAGTGATTTACCGAGATCTTA 540
Query 581 AATCGTCAAATATATTGCTTGACCCAAAATACGTTGCAAAATTATCGGATTTCGGTTTAG 640
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 541 AATCGTCAAATATATTACTTGACCCAGAATACGTTGCGAAATTATCGGATTTCGGTTTAG 600
Query 641 CAAAGCTTGGTCCTGTTGGAGACACACTACATGTGTCTTCCCGAGTTATGGGAACTTATG 700
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAAAGCTAGGTCCTGTTGGAGACACACTACATGTGTCTTCCCGAGTTATGGGAACTTATG 660
Query 701 GTTATTGTGCTCCTGAATATCAGAGAACCGGCTATCTTACAAATAAATCTGATGTCTATA 760
|||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |
Sbjct 661 GTTATTGTGCTCCTGAATATCAAAGAACTGGCTATCTAACAAATAAATCAGATGTCTACA 720
Query 761 GCTTTGGAGTTGTTTTGTTGGAACTTGTATCCGGAAGACGAGTTATCGACACAATGAGAC 820
||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 721 GCTTTGGAGTTGTGTTGTTGGAACTTATATCCGGAAGACGAGTCATCGACACAATGAGAC 780
Query 821 CTAGTCATGAGCAAAATCTAGTCACTTGGGCACAACCGATCTTTAGAGATCCGACTAGAT 880
|||||||||| |||||||| || |||||||||| |||||| |||||||||||||||||||
Sbjct 781 CTAGTCATGAACAAAATCTCGTTACTTGGGCACTACCGATTTTTAGAGATCCGACTAGAT 840
Query 881 ATTGGCAGCTAGCTGATCCACTGCTTCGAGGTGACTACCCGGAAAAGAGTTTTAACCAAG 940
|||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||||
Sbjct 841 ATTGGCAGCTAGCTGATCCATTGCTTCGAGGCGACTATCCGGAAAAGAGTTTGAACCAAG 900
Query 941 CTATAGCTGTAGCGGCAATGTGCCTGCATGAAGAACCTACGGTTAGACCACTAATGAGCG 1000
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 901 CTATAGCTGTAGCGGCAATGTGCCTGCATGAAGAACCAACGGTTAGACCACTAATGAGTG 960
Query 1001 ACGTTATTACAGCCTTGAGCTTTCTTGGTGCATCCTCAAACTCCTCCAATACCGGCCCTA 1060
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 961 ACGTTATTACAGCCTTGAGCTTTCTTGGTGCATCCTCAAATTCCTCCAATACCGGCTCTA 1020
Query 1061 ACCATTTGCAACAAAATCGATCCAAGAAAGATCAGGATGCAGTTCAGTGGGACTCAAGTC 1120
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1021 ACCATTTGCAACAAAATCGATCCAACAAATATCAGGATGCAGTTCAGTGGGACTCAAGTC 1080
Query 1121 CTA 1123
|||
Sbjct 1081 CTA 1083
> AT5G13160.1 | Symbols: PBS1 | Protein kinase superfamily protein
| chr5:4176579-4179885 FORWARD LENGTH=1849
Length=1849
Score = 176 bits (95), Expect = 4e-43
Identities = 432/588 (73%), Gaps = 50/588 (9%)
Strand=Plus/Plus
Query 214 GGCGAAGGCGGGTTCGGGCGGGTTTACAAAGGAAAGCTCG--AGAATCCGGCACAGGTCG 271
|||||||| || || || || || |||||||||| ||| | || | |||| ||||| |
Sbjct 552 GGCGAAGGTGGATTTGGACGTGTCTACAAAGGAAGGCTTGACAGCA-CCGG-TCAGGTTG 609
Query 272 TGGCAGTGAAACAACTTGATAGGAATGGAT-TACAAGGACAA-AGAG-AGTTCTTGGTCG 328
| || || |||||||| || |||||||| | ||||||| || |||| | ||| |||| |
Sbjct 610 TTGCTGTTAAACAACTAGACAGGAATGG-TCTACAAGG-TAACAGAGAATTTC-TGGTAG 666
Query 329 AGGTT-TTGATGCTTAGTCTTCTTCATCATACAAATCTT-GTGAATCTTATCGGTTATTG 386
||||| || ||||| ||||||||||||||| | || ||| || || ||||| ||||||||
Sbjct 667 AGGTTCTT-ATGCTCAGTCTTCTTCATCATCCCAA-CTTAGTCAACCTTATTGGTTATTG 724
Query 387 CGCCGATGGAGACCAAAGACTTCTT-GTTTACGAGTATATGCCCCTT-GGATC-TCTAGA 443
|| |||||||| ||| | | |||| || ||||||| |||| || || ||||| | | ||
Sbjct 725 TGCTGATGGAGATCAACG-CCTCTTGGTCTACGAGTTTATG-CCGTTAGGATCAT-TGGA 781
Query 444 AGATCATCTCCTCGATCTT-GAGCCGGGACAA--AAACCACTAGACTGGAACACT-CGTA 499
|||||| |||| ||||||| | || ||| || | || |||| ||||||| | | |
Sbjct 782 AGATCACCTCCACGATCTTCCA-CC-GGATAAGGAGGCC-TTAGATTGGAACA-TGAGAA 837
Query 500 TTAAGATCGCT-ATAGGAGCGGCAAAAGGAATT-GAGTATCTCCATGATGAGGCCGATCC 557
| || || ||| | || ||||| ||||| ||| || | ||| |||||| |||| | ||
Sbjct 838 TGAAAATAGCTGCT-GGTGCGGCGAAAGG-ATTGGAATTTCTACATGATAAGGCAAACCC 895
Query 558 TCCAGTGATTTACCGAGATCTTAAATCGTCAAATATATTGCTTGACCCA-AAATACGTTG 616
||| || ||||| ||||| |||| || |||||||| || || || | | |
Sbjct 896 TCCGGTTATTTATAGAGATTTTAAGTCATCAAATATTTTACTGGA-TGAGGGTTTCCACC 954
Query 617 C-AAAATTATCGGATTTCGG-TTTAGC-AAAGCTTGGTCCTGTTGGAGACACA-CTACAT 672
| || || || ||||| || || || ||| || || || ||||||| | || |||
Sbjct 955 CTAAGCTT-TCTGATTTTGGACTT-GCTAAA-CTCGGACCAACGGGAGACAAATCT-CAT 1010
Query 673 GTGTCTTCCCGAGTTATGGGAACTTATGGTTATTGTGCTCCTGAATAT-CAGA-GAACCG 730
|| || | ||||||||||||||||||||||||||||||| || || || | || | |
Sbjct 1011 GTCTCCACTAGAGTTATGGGAACTTATGGTTATTGTGCTCCCGAGTACGCA-ATGA-CGG 1068
Query 731 G-CTATCTTACAAATAAA-TCTGATGTCTATAGCTTTGGAGTTGTTTT 776
| | || | ||| |||| || |||||||| || ||||| || |||||
Sbjct 1069 GACAAT-TGACAG-TAAAATCAGATGTCTACAGTTTTGGTGTGGTTTT 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55471602225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5