BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319189

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24810.1 | Symbols: ICK3, KRP5 | Cyclin-dependent kinase inh...   734    0.0  


> AT3G24810.1 | Symbols: ICK3, KRP5 | Cyclin-dependent kinase inhibitor 
family protein | chr3:9060896-9061998 FORWARD LENGTH=920
Length=920

 Score =  734 bits (397),  Expect = 0.0
 Identities = 511/562 (91%), Gaps = 23/562 (4%)
 Strand=Plus/Plus

Query  1    ATGGGAAAATACATTAAGAAGTCAAAAGTCGCCGGAGCCATTTCCGTTAAGGATATATCT  60
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||
Sbjct  95   ATGGGAAAATACATTAAGAAGTCAAAAGTCGCCGGTGCCGTTTCCGTTAAGGATAAATCT  154

Query  61   CACCCAACCACTCTCCGTTTCCGTACCAGAGCCGCCGCCGCGAAAAACTTCGCCCTCCAC  120
            |||||| || ||||  ||||||||||||||||||||||||| |||||| |||||||||||
Sbjct  155  CACCCACCCGCTCTAGGTTTCCGTACCAGAGCCGCCGCCGCTAAAAACCTCGCCCTCCAC  214

Query  121  CGTCTCCGTTCTCATTCCAACGACTCAGACT-CTTTCAACTACCTCCAGCTCCGGAGCCG  179
            |||||||||||||||||| ||||  |||||| |||| |||||||||||||||||||||||
Sbjct  215  CGTCTCCGTTCTCATTCCGACGAAGCAGACTCCTTT-AACTACCTCCAGCTCCGGAGCCG  273

Query  180  CCGTCTCGTGAAGCTTCCATTACTCGTC-AATACTAAG-AAACAGC----TC-ACA---C  229
            |||||||||||||||||||||||||  | |||||  || |||||||     | |||   |
Sbjct  274  CCGTCTCGTGAAGCTTCCATTACTC-ACTAATAC-CAGAAAACAGCAGAAGCAACAGCTC  331

Query  230  A---GT-GTGTCAATCAATGTCAAACGAGAAACCCTAGGGCTAAATCCGGTCCGGCGAAG  285
            |    | ||||||||||||||||||||| ||||||||||||||  |||||||||||||||
Sbjct  332  ATTCCTAGTGTCAATCAATGTCAAACGAAAAACCCTAGGGCTAGTTCCGGTCCGGCGAAG  391

Query  286  AAATTAGAAG-CGGAGACGACGACGATGGAAGAAGCTTGTGGTGATAATGAGAGAATATC  344
            ||||||| || |||| ||||||||   |||||||||||||||||||||||||||||||||
Sbjct  392  AAATTAG-AGCCGGATACGACGAC---GGAAGAAGCTTGTGGTGATAATGAGAGAATATC  447

Query  345  TAGGTCTGATTGTAATTTTGGAGATAAAGGTTTTGATTTGGAATCAGAAAACAGGAGCAT  404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  448  TAGGTCTGATTGTAATTTTGGAGATAAAGGTTTTGATTTGGAATCAGAAAACAGGAGCAT  507

Query  405  GATAAGAGACTCAAAAGCTATACAAAGTGAGATTGAAGACTTCTTTGCTAACGCAGAGGA  464
            |||||| || |||||| | ||||||||||||||||||||||||||||||| ||||||  |
Sbjct  508  GATAAGTGATTCAAAATCAATACAAAGTGAGATTGAAGACTTCTTTGCTAGCGCAGAACA  567

Query  465  GCAACAACAGAGACTCTTCATTCAAAAGTACAACTTTGACATTGTCTCGGACAATCCATT  524
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  568  GCAACAACAGAGATTCTTCATTCAAAAGTACAACTTTGACATTGTCTCGGACAATCCATT  627

Query  525  GCCTGGACGTTACGAATGGGTC  546
            ||||||||||||||||||||||
Sbjct  628  GCCTGGACGTTACGAATGGGTC  649



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5