BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319208
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 2281 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 2281 bits (1235), Expect = 0.0
Identities = 1409/1494 (94%), Gaps = 7/1494 (0%)
Strand=Plus/Plus
Query 1 ATGATTTTTCTCTTTAGTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTATAATCGCC 60
|||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||
Sbjct 13 ATGACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTAATCTTT 72
Query 61 GGTTACATTTTCCTCGGaaaaaaaTTGAGTAAAGGTGAAGTTGATA-CTTCCACCATCCC 119
||||||||||||||| ||||| ||||||||| | |||||||||||| | ||||| || ||
Sbjct 73 GGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGC-TCCACGATTCC 131
Query 120 TGAGCCATTAGGAGCTTTGCCTCTATTCGGCCACCTCCATCTATTGCGCGGCAAAAAACT 179
||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 132 TGAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAAAAACT 191
Query 180 CATTTGCAAGAAACTAGCTGCCATATCCGAAAAACATGGTCCTATCTTCTCCCTCAAGTT 239
| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 192 CCTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTCAAGTT 251
Query 240 AGGGTCTTATAGGCTGGTTGTGGCCAGCGACCCAAAAACGGTGAAAGAATGTTTCACCAC 299
||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 252 AGGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCAC 311
Query 300 CAACGACTTGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTACA 358
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CAACGACTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTACA 370
Query 359 ACAATGCAAGTCTAACACTGGCTCCTTATGGAGACTATTGGCGTGAGTTACGTAAGATTG 418
||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 371 ACAATGCAAGTCTGACTCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTG 430
Query 419 TCACCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTTCTTCAG 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 TCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTTCTTCAG 490
Query 479 AATTAAACACGTTTATCAAACACCTATACAAAGGGAGTGGTGGAACTTCTATAGTGAAGA 538
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 491 AAGTAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAGTGAAGA 550
Query 539 TTGACATGTTATTCGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGGGGAAGA 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGGGGAAGA 610
Query 599 GAATTGGTTTCGGTGAAGTGAATAGCGAGGAATGGCGTTATAAGGAGTCCCTGAAGCATT 658
| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 611 GGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGAAGCATT 670
Query 659 GCGAGTTCTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGCTAGGATGGTTGG 718
|||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 671 GCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGATGGTTGG 730
Query 719 ATTTTGCAAAAATTTCTCAAATGAAGAGATTATTTATGGAGCTTGACTCAGTCAACACCA 778
|||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 731 ATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCAACACCA 790
Query 779 AGTGGCTCCAAGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAAGAACAA 838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AGTGGCTCCACGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAAGAACAA 850
Query 839 TCATGGATCTACTGCTCGACATCTTACCAGAAGATATTGTGATAAGTGGACATGTACGCG 898
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct 851 TCATGGATCTACTGCTAGACATCTTACCAGAGGATATTGTGATAAGTGGACACGTACGCG 910
Query 899 ATGTCATTGTGAAGGCAACGATTTTGGCTCTCACATTAACGGGATCAGACAGCACATCCA 958
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 911 ATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCACATCCA 970
Query 959 TCACTTTGACATGGGCAGTATCGCTACTACTCAACAATCCTGCTACTTTAAAAGCAGCAC 1018
|||||||||||||||| |||||||| |||||||||||||| ||| ||||| |||||||||
Sbjct 971 TCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAGCAGCAC 1030
Query 1019 AAGAAGAGATTGACAATTGTGTCGGGAAAGGTAGATGGGTTGAAGAATCCGACGTACAAA 1078
||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 1031 AAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGATATACAAA 1090
Query 1079 ACCTTAAGTACCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCAGCTCCTC 1138
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1091 ACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGGCTCCTC 1150
Query 1139 TTACAGGAATCCGCGAAGCACGTGAAGATTGTTTTGTGGGAGGATACCGTGTTGAGAAAG 1198
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1151 TAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAAAG 1210
Query 1199 GCACACGCTTGCTCGTCAACATTTGGAAACTTCATAGGGACCCCAAGATCTGGCTTGACC 1258
|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct 1211 GCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGCCTGACC 1270
Query 1259 CCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGAGAAATTACAATGTGAAAAGAGCGACT 1318
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||
Sbjct 1271 CCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGAGCAACT 1330
Query 1319 TTGAATACATTCCTTTTGGTTCGGGAAGAAGGTCGTGTCCGGG-GATCAATCTTGGTCTA 1377
|||||||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 1331 TTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCCGGGAG-TCAATCTTGGTCTA 1389
Query 1378 AGAGTTGTACACTTCGTGTTGGCTCGATTGCTTCAAGGCTTTGAGTTACGCAAAGTGTCT 1437
|||||||||||||| || |||||| ||||||||||||| |||||||||| ||||||||||
Sbjct 1390 AGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAAGTGTCT 1449
Query 1438 GATGAACCAGTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAAGATTAA 1491
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1450 GATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAA-GATTAA 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5