BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319209
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 2266 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 2266 bits (1227), Expect = 0.0
Identities = 1446/1553 (93%), Gaps = 10/1553 (1%)
Strand=Plus/Plus
Query 1 ATGATTTTTCTCTTTACTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTGTAATCGCC 60
|||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 13 ATGACTTTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTAATCTTT 72
Query 61 GGTTACATTTTCCTCGGaaaaaaaTTGAGTAAAAGTGAAGTTGATAGCTCCACCATCCCA 120
||||||||||||||| ||||| ||||||||| | ||||||||||||||||||| || ||
Sbjct 73 GGTTACATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGCTCCACGATTCCT 132
Query 121 GAGCCATTAGGAGCTTTGCCTCTATTCGGCCACCTCCATCTATTGCGCGGCAAAGAACTC 180
|||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| |||||
Sbjct 133 GAGCCATTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAAAAACTC 192
Query 181 ATTTGCAAGAAACTAGCTGCCATGTCCGAAAAACATGGTCCTATCTTCTCCCTTAAGTTA 240
||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 193 CTTTGCAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTCAAGTTA 252
Query 241 GGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GGGTTTTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCACC 312
Query 301 AACGACTTGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTATGTAGGCTACAA 359
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 313 AACGACTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTACAA 371
Query 360 CAATGCAATTCTGGCAT-TGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTG 418
|||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 CAATGCAAGTCTGAC-TCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTG 430
Query 419 TCACCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTTCTTCAG 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 TCACCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTTCTTCAG 490
Query 479 AAGTAAACGCATTGATCAAACACCTATACAAAGGGGGTGGTGGCACTTCGATGGTGAAGA 538
|||||||| | |||||||||||||||||||||||| |||||| ||||| || |||||||
Sbjct 491 AAGTAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAGTGAAGA 550
Query 539 TTGACATGTTATTCGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGGGGAAGA 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTGACATGTTATTTGAGTTTTTGACCTTCAATATAATCCTTAGGAAGATGGTGGGGAAGA 610
Query 599 GGATTGGTTTCGGTGAAGTGAAGAGCGAGGAATGGCGTTATAAGGAAGCGTTGAAGCATA 658
|||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 611 GGATTGGTTTCGGTGAAGTGAATAGCGATGAATGGCGTTATAAGGAGGCCCTGAAGCATT 670
Query 659 GCGTGTACTTGGCTGCGGTTCCTATGATAGGCGACGTTCTTCCATGGCTAGGATGGTTGG 718
||| ||||||||||| | |||||||||||||||||||| |||||||| | ||||||||||
Sbjct 671 GCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGATGGTTGG 730
Query 719 ATTTTGCAAAAATTTCTCAAATGAAGAGATTATTTAAGGAGCTTGACTCAGTCATCACCA 778
|||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 731 ATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCAACACCA 790
Query 779 AGTGGCTCAAAGAACATCTTAAGAGGAGATCA-GTAAATGAGAAGGATCAAGAAAAAACA 837
|||||||| | |||||||| |||| ||||||| | |||||||||||||||||||| ||||
Sbjct 791 AGTGGCTCCACGAACATCTCAAGAAGAGATCAAG-AAATGAGAAGGATCAAGAAAGAACA 849
Query 838 ATCATGGATCTACTGCTCGACATCTTACCAGAAGG-TATTGTGATATGTGGACATGTACG 896
||||||||||||||||| |||||||||||||| || |||||||||| ||||||| |||||
Sbjct 850 ATCATGGATCTACTGCTAGACATCTTACCAGA-GGATATTGTGATAAGTGGACACGTACG 908
Query 897 CGATGTCATTGTGAAGGCAACAATTTTGGTTCTCACATTAACGGGATCAGACAGCACATC 956
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 909 CGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCACATC 968
Query 957 CAACACTTTGACATGGGCTGTATCGCTGCTACTCAACAATCCAGCTGCTTTAAAAGCAGC 1016
|| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 969 CATCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAGCAGC 1028
Query 1017 ACAAGAAGAGATTGACAATTGTGTCGGGAAAGGTAGATGGGTTGAAGAATCCGACATACA 1076
||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||| |||||
Sbjct 1029 ACAAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGATATACA 1088
Query 1077 AAACCTCAAGTATCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCGGCTCC 1136
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1089 AAACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGGCTCC 1148
Query 1137 TCTTACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAA 1196
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TCTAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTGAGAA 1208
Query 1197 AGGCACGCGCTTGCTCGTCAACATCTGGAAACTTCATAGGGATCCCAAGATCTGGCCTGA 1256
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1209 AGGCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGCCTGA 1268
Query 1257 CCCCAAAGCCTTTAAGCCTGAGAGGTTCATGGAAGAGAAATCACAATGTGAAAAGAGCGA 1316
||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |
Sbjct 1269 CCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGAGCAA 1328
Query 1317 TTTTGAGTACATTCCTTTCAGTTCTGGAAGAAGGTCGTGTCCAGGGA-TCAATCTTGGTC 1375
||||| |||||||||||| |||| ||||| ||||||||||| |||| ||||||||||||
Sbjct 1329 CTTTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCC-GGGAGTCAATCTTGGTC 1387
Query 1376 TAAGAGTTGTACACTTCGTGTTGGCTCGGTTGCTTCAAGGGTTTGAGTTACGCAAAGTGT 1435
|||||||||||||||| || |||||| | |||||||||||||||||||||| ||||||||
Sbjct 1388 TAAGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAAGTGT 1447
Query 1436 CTGGTGAACCACTGGATATGGCCGAAGGGCCTGGTTTAGACTTGCCAAAGATTAAACCGG 1495
||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 1448 CTGATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAACCCGG 1507
Query 1496 TGGAAGTTGTTGTAACGCCTCGGCTCCACCCGGAGTTGTATAGTTTACTCTAA 1548
| ||||| ||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 1508 TCGAAGTAGTTGTAATGCCTCGGCTCGACCCGAAGTTGTATAGTTTACTCTAA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5