BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319217
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25250.1 | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-d... 1851 0.0
AT4G13000.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent a... 595 3e-169
> AT3G25250.1 | Symbols: AGC2-1, AGC2, OXI1, AtOXI1 | AGC (cAMP-dependent,
cGMP-dependent and protein kinase C) kinase family
protein | chr3:9195503-9197124 FORWARD LENGTH=1504
Length=1504
Score = 1851 bits (1002), Expect = 0.0
Identities = 1187/1276 (93%), Gaps = 14/1276 (1%)
Strand=Plus/Plus
Query 1 ATGCGAGAGGAAGACCAGAAACAGAGCCGGGCTCTAGATTTTAATCGACTCGAGGTTTTG 60
|||| ||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 64 ATGCTAGAGGGAGATGAGAAACAGAGCCGAGCTCTGGATTTCAATCGACTCGAGGTTTTG 123
Query 61 TCATTACTAGGTCGTGGTGCTAAAGGAGTTGTGTTTCTTGTCCGCGACGACGACGCTAAG 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCATTACTAGGTCGTGGAGCTAAAGGAGTTGTGTTTCTTGTCCGCGACGACGACGCTAAA 183
Query 121 TTGCTTGCTTTGAAAGTTATACTTAAGGAAGCCATagagaagaagaaaaagaaggctaaa 180
||||||||||| ||||||||||||||||||||||| | ||||||||||||||| || |
Sbjct 184 TTGCTTGCTTTAAAAGTTATACTTAAGGAAGCCAT--CG-AGAAGAAAAAGAAGGGTAGA 240
Query 181 gaaagtgaagaagaTGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATTAAGCAGATTC 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAAGTGAAGATGATGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATTAAGCAGATTC 300
Query 241 GACCATCCTCTTTTTCCGTCTCTTCACGGCGTTTTAGCTACCGATAAAGTCATCGGTTAT 300
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GACCATCCTCTCTTTCCGTCTCTTCACGGTGTTTTAGCTACCGATAAAGTCATCGGTTAT 360
Query 301 GCCATCGATTATTGTCCGGGACAAAATCTCAATTCTTTGAGGAAAATGCAATCGGAAAAT 360
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 361 GCGATCGATTATTGTCCGGGACAGAATCTCAATTCTTTGAGGAAAATGCAATCGGAAAGT 420
Query 361 ATGTTTTCCGACGACATTATCAGATTTTACGCGGCGGAGCTTGTACTAGCACTTGATTAT 420
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 421 ATGTTTTCCGACGAGATTATCAGATTTTACGCGGCGGAGCTTGTATTAGCACTTGACTAT 480
Query 421 TTGCATAATCAAGGAATTGTGTACAGAGATTTGAAGCCAGATAATGTGATGATCCAAGAA 480
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTACATAATCAAGGAATTGTGTATAGAGATTTGAAGCCAGACAATGTGATGATCCAAGAA 540
Query 481 AATGGACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACACCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 AATGGACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACGCCG 600
Query 541 CAACCGTCGCCGTCACCGTCTAAACCGTCGCCGGCAACGACGAGAAAGAAACGTCTCTTC 600
|||||||| ||||||| ||||||||| |||||| | | || |||||||||||||||||||
Sbjct 601 CAACCGTCACCGTCACTGTCTAAACCATCGCCGACGATGAAGAGAAAGAAACGTCTCTTC 660
Query 601 CGCTTCTCCAGTTTTTGTAACTCAGGAATCTCGCCGCAAGAATCGATCTCGATTCACTCA 660
|||||| ||||||| || |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 661 CGCTTCACCAGTTTCTGCAACTCAGGAATCTCGCCGCAAGAATCTATCTCGGTTCACTCA 720
Query 661 TCATCTACATTAGCCGTGTCAGATTCATCAGGAGAAAAGTCGAATTCTTTCGTCGGAACA 720
||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 721 TCATCTACATTGGCCGTGTCAGATTCTTCAGGTGAGAAGTCAAATTCTTTCGTCGGAACA 780
Query 721 GAGGAATACGTAGCGCCGGAGGTAATCACCGGAGACGGTCACGATTTCGCCGTTGATTGG 780
||||||||||| ||||||||||| || | ||| |||||||||||||| ||||| ||||||
Sbjct 781 GAGGAATACGTTGCGCCGGAGGTTATAAGCGGGGACGGTCACGATTTTGCCGTCGATTGG 840
Query 781 TGGTCGTTAGGGGTTGTTCTATACGAGATGTTGTATGGAACGACACCGTTTAGGGGATCG 840
|||||||||||||||||| |||| ||||||||||||||| |||| |||||||| ||||||
Sbjct 841 TGGTCGTTAGGGGTTGTTTTATATGAGATGTTGTATGGAGCGACGCCGTTTAGAGGATCG 900
Query 841 AACCGGAAAGAGACGTTTTACCGGATTTTATCTAAACCGCCGAATCTTACCGGTGAAACG 900
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 901 AACCGGAAAGAGACATTTTACCGGATTTTATCTAAACCGCCGAATCTAACTGGTGAAACG 960
Query 901 ACGTCGTTGAGGGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCGTAGGATTAAC 960
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 ACGTCGTTGCGTGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCGTAGGATCAAC 1020
Query 961 GTTGAGGAAATCAAAGGTCACGATTTCTTCAAAGGAGTAGATTGGGAGAAGGTGATTTTG 1020
|||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||
Sbjct 1021 GTTGAGGAAATCAAGGGTCATGATTTCTTCAGAGGAGTAGATTGGGAAAAGGTGATTTTG 1080
Query 1021 GTTTCTAGACCGCCGTATATTCCGGCGCCGGACGACGGTGGTGATAAGGGTAAA-GATGT 1079
|||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1081 GTTTCTAGACCGCCGTATATCCCGGCGCCGGACGACGGTGGTGATAAGGG-AACCGATGT 1139
Query 1080 AAATACGAAAATGGATGTGGAGAATATCGTCCAAGAGATTTTTGCTGCAAGAGAAGAACG 1139
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1140 AAATACGAAGATGGATGTGGAGAATATCGTCCAAGAGATTTTTGCTGCAAGACAAGAACG 1199
Query 1140 TGAGAAACAGAGTGGTGATAATAATAAT---GCTAATATGAAAATTAAAGGTGATAATAG 1196
||||||||||||||||||||| ||||| ||||||||||||||||||| | ||| |||
Sbjct 1200 TGAGAAACAGAGTGGTGATAACAATAAAAACGCTAATATGAAAATTAAAGATAATACTAG 1259
Query 1197 TGGGGAATGGGTTAAGGGGTTGAATAATAATAATAATCACGATTTAGAAAGTGAAAACAA 1256
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1260 TGGGGAATGGGTTAAGGGGTTGAATAATAAT------CACGATTTAGAAAGTGATAACAA 1313
Query 1257 TTTTTTGGTATTTTAA 1272
||||||||||||||||
Sbjct 1314 TTTTTTGGTATTTTAA 1329
> AT4G13000.1 | Symbols: | AGC (cAMP-dependent, cGMP-dependent
and protein kinase C) kinase family protein | chr4:7598093-7599257
REVERSE LENGTH=1165
Length=1165
Score = 595 bits (322), Expect = 3e-169
Identities = 707/885 (80%), Gaps = 58/885 (7%)
Strand=Plus/Plus
Query 191 aagaTGAGTATAAACGCGTGAGTTTCGAGCAAGGAGTATTAAG-C-AGATTCGACCATCC 248
|||||||||| |||||| | |||||||| |||||||| || | | |||||||||||||
Sbjct 219 AAGATGAGTACAAACGCATAAGTTTCGAACAAGGAGTGTT--GTCTCGATTCGACCATCC 276
Query 249 TCTTTTTCCGTC-TCTTCACGGCGTTTTAGCTACCGATAAAGTCATCGGTTATGCCATCG 307
||| ||||| | |||||| || ||| || | ||||||||||| |||||||| || || |
Sbjct 277 TCTGTTTCC-ACGTCTTCATGGTGTTATATCCACCGATAAAGTTATCGGTTACGCGATTG 335
Query 308 ATTATTGTCCGGGACA-AAATCTCAATTCTTTGAGGAAAATGCAATCGGAA-AATATGTT 365
|||| ||||| ||| | | ||||||| ||||| ||||||| || |||||| || |||||
Sbjct 336 ATTACTGTCCTGGA-AGAGATCTCAACTCTTTAAGGAAAAAACAGTCGGAAGAA-ATGTT 393
Query 366 TTCCGACGACATTATCAGATTTTACGCGGCGGAGCTTGT-ACTAGCACTTGATTATTTGC 424
|||||| || || || ||||||||||||||||||||||| | | |||||||| |||||||
Sbjct 394 TTCCGATGAGATCATTAGATTTTACGCGGCGGAGCTTGTGA-TTGCACTTGAGTATTTGC 452
Query 425 ATAATCAAGGAATTGTGTACAGAGATTTGAAGCCAGATAATGTGATGATCCAAGAAAATG 484
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 453 ATAATCAAGGAATTGTGTACAGAGATTTGAAGCCTGATAATGTGATGATTCAAGAGAATG 512
Query 485 GACATTTAATGCTTATAGATTTCGATCTTTCTACAAATCTAGCTCCAAGAACACCGCAA- 543
| ||| | |||||| | ||||| |||||||| || |||||| |||| ||||| || |||
Sbjct 513 GTCATCTGATGCTTGTTGATTTTGATCTTTCGACGAATCTACCTCCTAGAACTCCACAAT 572
Query 544 C--CGT---CGCCGTCACCGTCTAAACCGTCGCCGGCAACGACGAGAAAGAAACGTCT-- 596
| | | || |||||||| | || ||| |||| |||| ||||||||| ||||
Sbjct 573 CTTCTTTTTCGTCGTCACCG---AGACTTTCGACGGCGACGA--AGAAAGAAAGGTCTAT 627
Query 597 CTTCCGC-TTCTCCAGTTTTTGTAACTCAGGAATCTCGCCGCAAGAATCGATCTCGATTC 655
|||| || || ||| |||| |||||||| |||||||| ||| | || ||| | ||||
Sbjct 628 CTTC-GCATTTTCCGGTTTATGTAACTCCGGAATCTCCCCGGACGACTCGGTTTCGAG-- 684
Query 656 ACTCATCATCTACATTAGCCGTGTCAGATTCATCAGGAGAAAAGTCGAATTC-TTTCGTC 714
| || | || | || || | || || |||||||| |||||||| || ||| ||
Sbjct 685 A-TC--C-TC--CG--AGTCG-G--AGTTT--TCAGGAGAGAAGTCGAACTCGTTT-GTT 730
Query 715 GGAACAGAGGAATACGTAGCGCCGGAGGTAATCACCGGA-GACGGTCACGATTTCGCCGT 773
|||||||||||||| || ||||||||||||||||||||| | || || || ||||||||
Sbjct 731 GGAACAGAGGAATATGTTGCGCCGGAGGTAATCACCGGAAGT-GGCCATGACTTCGCCGT 789
Query 774 TGATTGGTGGTCGTTAGGG-GTTGTTCTATACGAGATGTTGTATGGAACGACACCGTTTA 832
|||||||||||||| ||| || ||| | || ||||||||||| ||| |||| |||||||
Sbjct 790 GGATTGGTGGTCGTT-GGGAGTGGTTTTGTATGAGATGTTGTACGGAGCGACGCCGTTTA 848
Query 833 GGGGATCGAACCGGAAAGAGACGTTTT-ACCGGATTTTATCTAAACCGCCGAATCTTAC- 890
|||| || ||||| |||||||| |||| | | || ||| || ||||||||| | ||
Sbjct 849 GGGGGTCCAACCGTAAAGAGACTTTTTTAAAG-ATATTAACTGAACCGCCGAGT-TTGGT 906
Query 891 CGGTGAAACGACGTCGTTGAGGGATTTGATTAGAAGATTGTTGGAGAAAGATCCTAGCCG 950
||| |||||||| ||||| || || ||| | |||| | ||||||||||||||||||||||
Sbjct 907 CGGAGAAACGACATCGTTAAGAGACTTGGTAAGAAAACTGTTGGAGAAAGATCCTAGCCG 966
Query 951 TAGGATTAACGTTGA-GGAAATCAAAGGTCACGATTTCTTCAAAGGAGTAG-ATTGGGAG 1008
||||||||| ||||| |||| |||| || || |||||||| ||||| || | |||||||
Sbjct 967 TAGGATTAATGTTGAAGGAA-TCAAGGGACATGATTTCTTTAAAGG-GTTGGATTGGGAT 1024
Query 1009 AAGGTGATTTTGGTTTCTA-GACCGCCGTATATTCCGGCGCCGGA 1052
|||| || ||| || | |||| ||||||||||||||||||||
Sbjct 1025 TTGGTGCTTAAGGTATC-ACGACCACCGTATATTCCGGCGCCGGA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5