BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319243
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6... 516 1e-145
AT2G04150.1 | Symbols: | pseudogene of F-box family protein | ... 385 4e-106
> AT3G18150.1 | Symbols: | RNI-like superfamily protein | chr3:6217929-6219500
FORWARD LENGTH=1371
Length=1371
Score = 516 bits (279), Expect = 1e-145
Identities = 654/823 (79%), Gaps = 74/823 (9%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATTCTATCTGGTTGTCCGAGTCTTGAGAGGTTAA-AGTTGTGTTTCTGCAA 59
|||||||| ||||||| ||||||||| | ||| ||||| |||| | | | | ||||
Sbjct 553 ATGGCTAACATTCTATTTGGTTGTCCAATTCTCGAGAGCTTAACACTAG-ATCACTGCGG 611
Query 60 TGCACTCAA-GATTCTTGATCTCAACAAATCAATGCGTCTGAGAACATTGGAAATAAACA 118
|| ||| || | |||||||||||| ||||||| |||| ||||||||||| |||||||||
Sbjct 612 TGGACT-AAGGGTTCTTGATCTCAGCAAATCACTGCGCCTGAGAACATTAGAAATAAACT 670
Query 119 GCGAC-CCTCAGTTCCC---C---CGGACACTACAGATTGTGGCACCATATATCCATTGT 171
| || | |||||| | ||| || | ||||||||||| ||| ||| |||||||
Sbjct 671 GTAACATTTGGGTTCCCGAGCTAACGG-CAATGCAGATTGTGGCTCCACATACCCATTGT 729
Query 172 CTCATATTGA-AAAGCTCTCATCATTTACCATGT-GTTTTAGTTGATGTCTCGT--CTTT 227
|||| ||||| ||| |||| | | ||||||||| || || ||||||||||| | ||
Sbjct 730 CTCAGATTGAGAAA-CTCT-A--AATTACCATGTAGTCTT-GTTGATGTCTCATCACTGA 784
Query 228 AGTCGAAGCTAGACTGAACATTAGCATTGCA-TCAGTTTC-AAAAACA--AAGAATGA-T 282
|| ||||||| ||| |||||| |||||| | ||| |||| |||| || ||| ||| |
Sbjct 785 AG--GAAGCTAAACTTAACATTTGCATTG-ACTCATTTTCTAAAACCATCAAGGCTGACT 841
Query 283 AGTCTTCAAGTCATGGTGCTAAATATGTTAGAAAAGTTGCAGAACGTGGAGAAGCTTACT 342
||||||||||| | || |||| ||||| ||||||||||| |||||||||||||||||
Sbjct 842 -TTCTTCAAGTCACGCTGTTAAAGATGTTGGAAAAGTTGCACAACGTGGAGAAGCTTAC- 899
Query 343 TTTGTTGGGGGAAA-TTTGCTTAAGATATTATCTATGGCCGAGCTTCGTGGTGTTCCTTT 401
|||| || ||||| ||| ||| |||| ||||| | ||||||||||||||||| |||||
Sbjct 900 TTTG--GGTGGAAACTTT-CTTCAGATTTTATCCGTTGCCGAGCTTCGTGGTGTCCCTTT 956
Query 402 TCCGATGTTCAA-GTTTAAGTCTTTGACTCTTGAGAGAGTGATCTTTCGGTATGTTATTC 460
||||||||||| || ||| ||||||||| |||| ||| ||||||| |||||||||||
Sbjct 957 CCCGATGTTCAAGGTGAAAG-ATTTGACTCTCGAGACAGTCATCTTTCAGTATGTTATTC 1015
Query 461 CTGGTATAGAAAGAGTGTTAAAAAACTCACCTAATTTAAAGAAGCTA-CA---C--ACAA 514
|||||||||||||||||||| ||||||||||| |||||||||||||| || | ||||
Sbjct 1016 CTGGTATAGAAAGAGTGTTACAAAACTCACCTGATTTAAAGAAGCTAACATTACTCACAA 1075
Query 515 AGGATTGCTACCATAAACAGCGTGTGTATCTTGGCGACTACGTGGATTTGCAAGCCTTTA 574
|||||| ||||||||||| | ||| ||||||||||||| || |||||||| ||| |||||
Sbjct 1076 AGGATTTCTACCATAAACCGGGTGAGTATCTTGGCGACCACATGGATTTGGAAGGCTTTA 1135
Query 575 ATCTGGATCAATGTTGGAGATCAAAATATGGTG--------AA---GT--T-T--GCC-- 616
|||| ||||||||||||| |||||||||||||| || || | | |
Sbjct 1136 ATCTCGATCAATGTTGGAAATCAAAATATGGTGTCTTTTGGAACAAGTCATGTTTGGATG 1195
Query 617 -AGAG-CA---C--GTTGTTTCATTCATGGACCTTACGCTTAAAAATACAAAGGCATTAT 669
|||| || | |||||||||||| |||| |||| ||||||||| ||||||||||||
Sbjct 1196 TAGAGTCAGAGCACGTTGTTTCATTCGTGGAACTTATGCTTAAAAACACAAAGGCATTA- 1254
Query 670 ATTAGACAAGATGGTC-TACTGTTGGAAGACCATAACCTTAGGTTTAAAGAGCTGGTGCC 728
|||||||||||| ||||||||||||||||| || |||||||||||||| |||| ||
Sbjct 1255 ----GACAAGATGGTCGTACTGTTGGAAGACCATTACGTTAGGTTTAAAGAGATGGTTCC 1310
Query 729 AACACTTCCTCACAACTGTAATGTCTCTGTTGCCCTCTATACC 771
|| |||| ||||||||| |||| |||| |||||||||| |||
Sbjct 1311 AAGACTTTCTCACAACTATAATATCTCCATTGCCCTCTACACC 1353
> AT2G04150.1 | Symbols: | pseudogene of F-box family protein
| chr2:1400044-1401282 FORWARD LENGTH=1239
Length=1239
Score = 385 bits (208), Expect = 4e-106
Identities = 321/372 (86%), Gaps = 21/372 (6%)
Strand=Plus/Plus
Query 1 ATGGCTAAGATTCTATCTGGTTGTCCGAGTCTTGAGAGGTTAAAGTTGTGTTTCTGCAAT 60
|||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||
Sbjct 165 ATGGCTAAGATTCTATCTGGCAGTCCGATTCTTGAGAAGTTAAAGTTGTGTTCCTGCAAG 224
Query 61 GCACTCAAGATTCTTGATCTCAACAAATCAATGCGTCTGAGAACATTGGAAATAAACAGC 120
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 225 GCACTCAAGATTCTTGATCTCAGCAAATCAATGCGTCTGAGAACATTAGAAATAAACTGC 284
Query 121 GACCCTCAGTTCCCCCGGACACTACAGATTGTGGCACCATATATCCATTGTCTCATATTG 180
||| || || | | ||| |||||||| |||||||||||||||||||||||||||
Sbjct 285 GACACTAAG-----GAGCA-ACTCCAGATTGTTGCACCATATATCCATTGTCTCATATTG 338
Query 181 A-AAAGCTCTCATCATTTACCATGTGTTTTAGTTGATGTCTCGTCTTTAGTCGAAGCTAG 239
| ||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 339 AGAAA---ATC-TCATTTACCATGTATTTTAGTCGATGTCTCGTCTTTAGTCGAAGCTAG 394
Query 240 ACTGAACAT-TAGCATTG-CATCAGTTTCAAAAACAAA-GAA-T-GATAGTCTTCAAGTC 294
| ||||||| | ||| || | ||| |||||||||||| || | ||| ||||||||||
Sbjct 395 ATTGAACATCT-GCACTGGC-TCACTTTCAAAAACAATCGAGGTTGATTCTCTTCAAGTC 452
Query 295 ATGGTGCTAAATATGTTAGAAAAGTTGCAGAACGTGGAGAAGCTTACTTTTGTTGGGGGA 354
||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct 453 ATGGTTCTAAAGATGTTAGAAAAGTTGCACAACGTGGAGAAGCTTACTTTTG--GGGT-A 509
Query 355 AATTTGCTTAAG 366
||||||||||||
Sbjct 510 AATTTGCTTAAG 521
Score = 171 bits (92), Expect = 1e-41
Identities = 128/145 (88%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 365 AGATATTATCTA-TGGCCGAGCTTCGTGGTGTTCCTTTTCCGATGTTCAAGTTTAAGTCT 423
|||| ||||||| | | |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 643 AGATGTTATCTACT-GACGAGCTTCGTGGTGTTCCTTTTCCGATGTTTAAGGTTAAGTCT 701
Query 424 TTGACTCTTGAGAGA-GTGATCTTTCGGTATGTTATTCCTGGTATAGAAAGAGTGTTAAA 482
||||||||||| | | | | ||| | |||||||||| |||||||||||||||||||| |
Sbjct 702 TTGACTCTTGACACAAGGG-TCTCTAAGTATGTTATTTCTGGTATAGAAAGAGTGTTACA 760
Query 483 AAACTCACCTAATTTAAAGAAGCTA 507
|||||||||| ||||||||||||||
Sbjct 761 AAACTCACCTGATTTAAAGAAGCTA 785
Score = 145 bits (78), Expect = 8e-34
Identities = 116/133 (87%), Gaps = 7/133 (5%)
Strand=Plus/Plus
Query 649 TTAAAAATACAAAGGCATTATATTAGACAAGATGGTCTACTGTTGGAAGACCAT-AACCT 707
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1108 TTAAAAATACAAAGGC-----ATTAGACAAGATGGTCTACTGTTGGAAGACCATTAAC-T 1161
Query 708 TAGGTTTAAAGAGCTGGTGCCAACACTTCCTCACAACTGTAATGTCTCTGTTGCCCTCTA 767
||||||||||||| |||| ||| ||||| |||||||||||||||||| ||| ||| ||
Sbjct 1162 TAGGTTTAAAGAGTTGGTTCCACCACTTTTTCACAACTGTAATGTCTCCATTGTCCTTTA 1221
Query 768 TACCAAGCCGTAA 780
|||||||| ||||
Sbjct 1222 TACCAAGCGGTAA 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5