BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319258
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04410.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 366 4e-101
> AT2G04410.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr2:1533697-1535118 REVERSE LENGTH=615
Length=615
Score = 366 bits (198), Expect = 4e-101
Identities = 211/217 (97%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 1 ATGACCCTTCATCAGCTGAGGGATTTACTGTTATCTTCAACAAAGCTAGAAACGAGAA-A 59
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 128 ATGACCCTTCATCAGCTGAGGGGTTTACTGTTATCTTCAACAAAGCTAGAAACGAGAAGA 187
Query 60 AAGGGAGGTGGAAAATCCGACTCACCAGGGAAAGATGAACCTGGATATAATAAAAATGGG 119
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 AA-GGAGGTGGAAAATCTGACTCACCAGGGAAAGATGAACCTGGATATAATAAAAATGGG 246
Query 120 GAAGTTCTTGAGAAACCCGCCAAAAAATGGTTTTGCTGTATACGCTCAGAATAAGTGGAG 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 247 GAAGTTCTTGAGAAACCCGCCAAAAAATGGTTTTGCTGTATACGCGCAGAATAAGTGGAG 306
Query 180 AGGTGTTTGCCTTGGAAGGTCGTTTATCTATATCTAA 216
||||||||||||||||||||| |||||||||||||||
Sbjct 307 AGGTGTTTGCCTTGGAAGGTCTTTTATCTATATCTAA 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5