BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319261
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix h... 841 0.0
> AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix
hydrolase homolog 6 | chr2:1543320-1545462 FORWARD LENGTH=1311
Length=1311
Score = 841 bits (455), Expect = 0.0
Identities = 727/858 (85%), Gaps = 20/858 (2%)
Strand=Plus/Plus
Query 1 ATGGACGTTGAAGCTCAGGAGACCCCTTTACTTCAATGGAAGCCAGATGATTACGGAGGT 60
|||||| ||||| ||||||| ||| |||||||||| || |||||| |||| ||||||
Sbjct 317 ATGGACAATGAAGATCAGGAGTCCCTTTTACTTCAAGGGGTTCCAGATAATTATGGAGGT 376
Query 61 GTTAAGGTGAACTTGACAGAGCCAATGACTACTGAGGATTTTGTCCCAAAGCTGAGGGCT 120
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 377 GTTAAGGTGAACTTGACAGAACCAATGACTATTGAGGATTTTGTCCCAAAGCTGAGAGCT 436
Query 121 TCACTTGTGGATTGGAGGAATCAGGGGAAGAAGGGAATATGGTTAAAGCTAGCTGATGGG 180
||||||||| ||||||| |||||||||| |||||| |||||||||||||| || ||||||
Sbjct 437 TCACTTGTGTATTGGAGCAATCAGGGGACGAAGGGGATATGGTTAAAGCTTGCCGATGGG 496
Query 181 CTTGAGAATCTTATTGCACCTGCGAAAGCGGAAGGGTTTAAATACCACCATGCTGAGAGT 240
||||| ||||||||||||||||| ||||| ||||||||| | ||||||||| |||||
Sbjct 497 CTTGACAATCTTATTGCACCTGCAAAAGCAGAAGGGTTTGTGTGCCACCATGCCGAGAGG 556
Query 241 GATTACTTGATGCTTGTATCTTGGCTCTCAGACT-TGCAC-AACACTATTCCTGCTAATG 298
|| ||| |||||| ||||||| || | || | | | | | ||| ||||||| ||||
Sbjct 557 GAATACACCATGCTTACATCTTGGATCGCTGA-TGTTC-CTAGTACTCTTCCTGCCAATG 614
Query 299 CTTCTCATCGTATTGGGA-TCGCTGCTTTTGTCTTAAAC-AGTA-ACC-GAGAGGTGCTC 354
| |||||||||||| ||| | | ||| |||||| ||||| || | ||| |||||||||
Sbjct 615 CGTCTCATCGTATT-GGAGTTGGTGCCTTTGTCCTAAACAAGAAGACCAAAGAGGTGCTT 673
Query 355 GTTGTCCAGGAGATTGGCGGTCCTTTCGATGGTACAGGAGTGTGGAAACTGCCTACCGGT 414
|| ||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||
Sbjct 674 GTGGTCCAGGAGATTGATGGTCATTTCAAAGGTACAGGAGTGTGGAAACTGCCTACCGGT 733
Query 415 GTTATTAAAGAGGGAGAGGGTGTTTGGGCTGGAGCAGAAAGGGAAGTGGAAGAAGAAACT 474
||| |||||||||| ||| | |||||| |||||| |||||||||||||||||||||
Sbjct 734 GTTGTTAAAGAGGGTGAGAATATTTGGGAAGGAGCACTTAGGGAAGTGGAAGAAGAAACT 793
Query 475 GGTATTAAGACGACATTTAAAGAAGTCCTAGCTTTCAGGGAAAGCCACAAATCATTCTCG 534
||||||||||| | |||| ||||||||| |||||||||||||||||| || |||||| |
Sbjct 794 GGTATTAAGACAAAATTTGTAGAAGTCCTGGCTTTCAGGGAAAGCCACCAAGCATTCTTG 853
Query 535 GAAAAAAGAAAGACGGATATAATGTTCCTCTGTGAGTTGAACATGAAACCAGGCACTTTT 594
|||| || ||| |||||||| | |||||||||||||| | ||| ||| |||||||
Sbjct 854 GAAATAA-AAA--CGGATATATTTTTCCTCTGTGAGTT-A----GAA-CCAACCACTTTT 904
Query 595 GAAATCAATAAAGAAAAGACTGAGATCT-ACGCTGCTAAGTGGATGCCGATTGAGGAATA 653
|||||||| ||| || | ||||||||| | ||||||||||||||||| ||||| |||||
Sbjct 905 GAAATCAAGAAACAAGACTCTGAGATCTTA-GCTGCTAAGTGGATGCCAATTGAAGAATA 963
Query 654 TGTAAACCAACCCTGGAACCAGGAGAAAGAGTTGTTCAGGTTCATGGCTAACATCTGCTT 713
||||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||
Sbjct 964 CGTAAACCAACCCTGGAACCAGAAGAAAGAACTGTTTAGGTTCATGGCGAACATCTGCTT 1023
Query 714 GAAGAGATCGCAGGAGATGGAATATGTGGGTTTCTCGACTGTCCGCACAACAACTTCAAC 773
|||||||| ||||||||||||||| |||||||||| | |||| || || |||||| |
Sbjct 1024 GAAGAGATTGCAGGAGATGGAATACATGGGTTTCTCCAAAGTCCTTACTACGACTTCATC 1083
Query 774 TGGTAGGGAGAGCTATCTTTACTGTAACACTGATCATGCCAACCTCCTCAACGCAACGCG 833
||| | ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1084 TGGGAAAGAGAGCTATCTTTACTGCAACACCGATCACGCCAACCTCCTCAACGCAACGCG 1143
Query 834 TGGCCCAGCCTCCACCTC 851
||||| ||||||||||||
Sbjct 1144 TGGCCTAGCCTCCACCTC 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5