BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319272

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G04622.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   267    4e-71


> AT2G04622.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G43695.1); Has 
30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr2:1613686-1614019 REVERSE LENGTH=246
Length=246

 Score =  267 bits (144),  Expect = 4e-71
 Identities = 214/245 (87%), Gaps = 15/245 (6%)
 Strand=Plus/Plus

Query  1    ATGGAGAAAATATCAATGAAGTTTGCTTTCGTTGCCTTCTTTGTTGTTACATTCGTGATG  60
            ||||||| || ||||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGAGAACATCAACGAAGTTCGCTTTTGTTGCCTTCTTTGTTGTTACATTCGTGATG  60

Query  61   TGTATCATAACTATACAAAATGTTGAAGCAAGGCGTGTATTATCGGAAGAAATTCCACAG  120
            || ||| |||||| || ||||||||||||||  ||||||||||| |||||||| ||||| 
Sbjct  61   TGCATCGTAACTACACGAAATGTTGAAGCAAAACGTGTATTATCCGAAGAAATGCCACAA  120

Query  121  ATTGCGTTGCATCGTGA---T--G-AG-AA----C----CGATGGGGTCTTGGGTGCAAA  165
            ||||| ||||||| |||   |  | || ||    |    |||||||||||||||||||||
Sbjct  121  ATTGCTTTGCATCATGAAGCTTTGCAGCAAAATGCGAATCGATGGGGTCTTGGGTGCAAA  180

Query  166  AAAGGATGTCATTTGATATGTTATGCTCCTGATCCAACTTTTCCTATATGTCGTTGTATA  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAAGGATGTCATTTGATATGTTATGCTCCTGATCCAACTTTTCCTATATGTCGTTGTATA  240

Query  226  TGCTA  230
            |||||
Sbjct  241  TGCTA  245



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5