BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319309

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G05335.1 | Symbols: SCRL15 | SCR-like 15 | chr2:1942557-1943...   424    3e-118


> AT2G05335.1 | Symbols: SCRL15 | SCR-like 15 | chr2:1942557-1943042 
FORWARD LENGTH=306
Length=306

 Score =  424 bits (229),  Expect = 3e-118
 Identities = 288/314 (92%), Gaps = 13/314 (4%)
 Strand=Plus/Plus

Query  1    ATGAGATTTGCTAGTTTGTTTGTGTTTTCTTGTATTTTCATGTTCCTC-ATTATAAGCCA  59
            |||||||||||||||||||||||| ||| ||||| ||||||||||||| |  ||||||||
Sbjct  1    ATGAGATTTGCTAGTTTGTTTGTGGTTTATTGTACTTTCATGTTCCTCGA-CATAAGCCA  59

Query  60   TGTCAAA---GAGGTGGAACCGGTGCCATATTGTAAAGTTATCCA-ATGGTACGATGTTA  115
            |||||||   |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  60   TGTCAAATGTGAGGTGGAACCGGTGCCATATTGTAAAGTTAT-CACATGGTACGATGTTA  118

Query  116  AATGTGGTTCTGATGGAAACAAGACGTGCGTAGACCACCTTATCAAAGGGCATATATATG  175
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  AATGTGGTGCTGATGGAAACAAGACGTGCGTAGACCACCTTATCAAAGGGCATATATATG  178

Query  176  ACGTTCCTATTTGTGATTGTAGTGACTTGAAGACAACACCGTTTGGAATTCTCTGCACAT  235
            |||||||| |||||||||||||||| |||| |||| ||  |   | ||||||||||||||
Sbjct  179  ACGTTCCTGTTTGTGATTGTAGTGAGTTGACGACATCA--G---G-AATTCTCTGCACAT  232

Query  236  GTCAACACCGTTTTCCTTGTAAAGAGCCACCACCGTTACACCGTATTTCCATAAGAAAAC  295
            ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct  233  GTCAACACCGTTTTCCTTGTAAAGAGCCACCTCCGTTACATCGTATTTCCATCAGAAAAC  292

Query  296  AAATACGGGGATAA  309
            |||| |||||||||
Sbjct  293  AAATCCGGGGATAA  306



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14326308465


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5