BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319311
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05400.1 | Symbols: | Ubiquitin-specific protease family C1... 800 0.0
AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:19769... 673 0.0
AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:19839... 453 8e-127
> AT2G05400.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr2:1974886-1976570 FORWARD LENGTH=1415
Length=1415
Score = 800 bits (433), Expect = 0.0
Identities = 519/560 (93%), Gaps = 7/560 (1%)
Strand=Plus/Plus
Query 30 AAG-GGGATTTCTGATGAATGAAGAACTTATAGTTGTTGCCAAGATAGAGGTTCTTGAAG 88
||| |||| |||||| ||| | |||||| | |||||||||||| |||||||||||||||
Sbjct 628 AAGAGGGACTTCTGAGGAACGGAGAACTCACCGTTGTTGCCAAGGTAGAGGTTCTTGAAG 687
Query 89 TTGTAGGAAATTTAGATGTATCAGAAGAATATTCACCAGTAA-TGAAAACCATAGATGTC 147
|||||||||| |||||||||||||| |||| ||||||||||| || ||||||||||||||
Sbjct 688 TTGTAGGAAAATTAGATGTATCAGAGGAATCTTCACCAGTAATTG-AAACCATAGATGTC 746
Query 148 AATGGGTTTCAAGTTCTTCGTTCACAGGAAGAATCTGTGAAGTCTTTATTTGAAAGACAT 207
||||| ||||||||||||| |||||||| ||||| || ||||||||||||||||||||||
Sbjct 747 AATGGATTTCAAGTTCTTCCTTCACAGGTAGAATATGCGAAGTCTTTATTTGAAAGACAT 806
Query 208 CTAAATATTGCATCAAAATTTCGTCCAAAGAATTCATACCTGAAGACGGCGTACATGAAT 267
||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 807 CTAGATATTGCATCAAAATTCCGTCCAAAGAATCCATACCTAAAGACGGCGTACATGAAT 866
Query 268 GTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGAT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GTCCTCTTGAGTTTAACCCAAACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGAT 926
Query 328 CTCTCTGATGCTGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGG 387
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 CTCTCTGATGCAGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGG 986
Query 388 TTGGagaagaaacttgatgaagtaaaggaaaagaaaaagaaagaagaGGCTTGTTTGGCC 447
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TTGGAGAAGAAACTTAATGAAGTAAAGGAAAAGAAAAAGAAAGAAGAGGCTTGTTTGGCC 1046
Query 448 CG-GATACAAGAAATCGACGAACA-GCTTCAGCCATTTAAGAAGACGTACTTAGACCTTG 505
| ||||||||| || |||||||| | || ||||||| ||||||| |||||||||||| |
Sbjct 1047 -GAGATACAAGACATGGACGAACATG-TTAAGCCATTGAAGAAGAAGTACTTAGACCTGG 1104
Query 506 AAGCTCAGATAGATAAGGAGAAAGAAGAGTTGTTAGCAGCTAGAGCTCCTCTCTCCTTGA 565
||||||||||||||||| |||| | ||||||| |||| || |||||||||||||||||||
Sbjct 1105 AAGCTCAGATAGATAAGAAGAAGGCAGAGTTGCTAGCTGCAAGAGCTCCTCTCTCCTTGA 1164
Query 566 ACGATGACAATGTTGTCTGA 585
||||||||||||||||||||
Sbjct 1165 ACGATGACAATGTTGTCTGA 1184
> AT2G05410.1 | Symbols: | TRAF-like family protein | chr2:1976918-1978553
FORWARD LENGTH=1082
Length=1082
Score = 673 bits (364), Expect = 0.0
Identities = 510/580 (88%), Gaps = 12/580 (2%)
Strand=Plus/Plus
Query 1 ATGATTACCCTCGCCGAACTTAACAACAAAAGGGGATTTCTGATGAATGAAGAACTTATA 60
|||||||||| | ||||||||||| ||||| |||||||||| | |||| |||||| | |
Sbjct 492 ATGATTACCCACACCGAACTTAACGCCAAAATGGGATTTCTGGTAAATGGAGAACTCAAA 551
Query 61 GTTGTTGCCAAGATAGAGGTTCTTGAAGTTGTA-GGAAATTTAGATGTATCAGAA-GAAT 118
|||||||| |||||||||||||||||||||||| ||||| |||||||||||| || ||||
Sbjct 552 GTTGTTGCTAAGATAGAGGTTCTTGAAGTTGTAGGGAAA-TTAGATGTATCA-AAGGAAT 609
Query 119 ATTCACCAGTAATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCGTTCACAGGAAG 178
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 610 CTTCACCAATAATGAAAACCATAGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAG 669
Query 179 AATCTGTGAAGTC-TTTATTTGAAAGACATCTAAATATTGCATCAAAATTTCGTCC-AAA 236
| ||||||||| | ||| ||||||| | | ||| |||||| |||||||||||||| |||
Sbjct 670 ATTCTGTGAAG-CGTTTGTTTGAAAAAAACCTAGATATTGTATCAAAATTTCGTCTTAAA 728
Query 237 GAATTCATACCTGAAGACGGCGTACATGAATGTCCTCTTGAGTTTAACCCAAACGATATG 296
||| |||| ||||||| |||| ||||||| ||||| ||||||||||| ||||| | ||
Sbjct 729 -AATCCATATTTGAAGACTGCGTGCATGAATCTCCTCCTGAGTTTAACCGAAACGCTGTG 787
Query 297 TCAATCTCCTCAAGAACTCTCCAATGATGATCTCTCTGATGCTGGCGCTGCATTGGCATA 356
|||||| |||||||||||||||||||||| |||||||||||| || | |||| |||||||
Sbjct 788 TCAATCGCCTCAAGAACTCTCCAATGATGGTCTCTCTGATGCAGGTGTTGCACTGGCATA 847
Query 357 TTTGAGAGAAGCAGGGTTTGAGTTGGATTGGTTGGagaagaaacttgatgaagtaaagga 416
||||| |||| ||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 848 TTTGATAGAAACAGGGCTTAAGTTGGATTGGTTGGAGAAGAAACTTGATGAATTAAAGGA 907
Query 417 aaagaaaaagaaagaagaGGCTTGTTTGGCCCGGAT-ACAAGAAATCGACGAACAGCTTC 475
|||||| |||||||||||| ||||||||| |||| | | | ||||| |||||||||||||
Sbjct 908 AAAGAAGAAGAAAGAAGAGTCTTGTTTGGTCCGGCTGAGA-GAAATGGACGAACAGCTTC 966
Query 476 AGCCATTTAAGAAGACGTACTTAGACCTTGAAGCTCAGATA-GATAAGGAGAAAGAAGAG 534
||||||||||||||| || ||||||| |||||| ||||||| | ||||||||||||||||
Sbjct 967 AGCCATTTAAGAAGAGGTGCTTAGACATTGAAGATCAGATAAG-TAAGGAGAAAGAAGAG 1025
Query 535 TTGTTAGCAGCTAGAGCTCCTCTCTCCTTGAACGATGACA 574
|||||||||||||||| |||||||| ||| |||||||||
Sbjct 1026 TTGTTAGCAGCTAGAGAACCTCTCTCTTTGTACGATGACA 1065
> AT2G05420.1 | Symbols: | TRAF-like family protein | chr2:1983901-1985341
FORWARD LENGTH=894
Length=894
Score = 453 bits (245), Expect = 8e-127
Identities = 381/445 (86%), Gaps = 15/445 (3%)
Strand=Plus/Plus
Query 33 GGGATTTCTGATGAATGAAGAACTTATAGTTGTTGCCAAGATAGAGGTTCTTGAAGTTGT 92
|||||||||| |||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 375 GGGATTTCTGGTGAATGGAGAACTCACCCTTGTTGCCAAGGTAGAGGTTCTTGAAGTTGT 434
Query 93 AGGAAATTTAGATGTATCAGAAG-AATATTCACCAGTAATGAAAACCATAGATGTCAATG 151
|||||| |||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 435 AGGAAAATTAGATGTATCA-AAGAAATCTTCACCAGTAATGGAAACCATAGATGTCAATG 493
Query 152 GGTTTCAAGTTCTTCGTTCACAGGAAGAATCTGTGAAGTC-TTTATTTG-AAAGACATCT 209
||||||||||||||| | || | | ||||| ||||| || ||| |||| ||| ||| ||
Sbjct 494 GGTTTCAAGTTCTTCCT-CAAAT-A-GAATCGGTGAA-TCGTTTGTTTGCAAA-ACACCT 548
Query 210 AAATATTGCATCAAAATTTCGTCCAAAGAATTCATACCTGAAGACGGCGTACATGAATGT 269
| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 549 AGATATTGCATCCAAATTTCGTCCAAAGAAACCATATATGAAGACGGCGTACATGAATGT 608
Query 270 CCTCTTGAGTTTAACCCAA-ACGATATGTCAATCTCCTCAAGAACTCTCCAATGATGATC 328
||| | || |||||| || ||| | || ||||| |||||||| |||||||||||||||
Sbjct 609 TCTCCTAAGCTTAACC-AAGACGCTGTGCCAATCGCCTCAAGATCTCTCCAATGATGATA 667
Query 329 TCTCTGATGCTGGCGCTGCATTGGCATATTTGAGAGAAGCAGGGTTTGAGTTGGATTGGT 388
| |||| ||| ||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 668 TATCTGGTGCAGGCGCTGCACTGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGT 727
Query 389 TGGagaagaaacttgatga-agtaaaggaaaagaaaaagaaagaagaGGCTTGTTTGGCC 447
|||||||||||| || ||| | ||||||||||||| ||||| |||||||||| ||||
Sbjct 728 TGGAGAAGAAACATGGTGAGA-TAAAGGAAAAGAAGAAGAAGGAAGAGGCTTCTTTGAAA 786
Query 448 CGGATACAAGAAATCGACGAA-CAG 471
||| | |||||||| || ||| |||
Sbjct 787 CGGCTGCAAGAAATGGA-GAAACAG 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5