BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319341
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06005.1 | Symbols: FIP1 | FRIGIDA interacting protein 1 | c... 1729 0.0
> AT2G06005.1 | Symbols: FIP1 | FRIGIDA interacting protein 1 |
chr2:2332547-2336156 FORWARD LENGTH=1238
Length=1238
Score = 1729 bits (936), Expect = 0.0
Identities = 1026/1070 (96%), Gaps = 4/1070 (0%)
Strand=Plus/Plus
Query 1 ATGTCAACGGAGAGACGTTCTTCGTCAAATCCGATGACCAACGAAGAGAACGCTATGTTC 60
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 37 ATGTCAACGGAGAGACGTGCTTCGTCGAATCCAATGACCAACGAAGAGAACGCTATGTTC 96
Query 61 CTTGACATATTGCATGAAGCACCATTATTTGGTCACAGGAAATCTAGAAGTCTTGTTGGA 120
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 97 CTTGATATATTGCATGAAGCACCATTATTTGGTCACAGGAAATCTAGAAGCCTTGTTGGA 156
Query 121 AGTTACCTCTATATCG-TTCTATTGGCAGGTTATGCTATTTTAGCTGCAGGAGCTCCTTG 179
|||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 157 AGTTACCTCTATAT-GCTTCTATTGGCAGGTTATGCTATTTTAGCTGCTGGTGCTCCTTG 215
Query 180 GATATTTCACCGAGTCGAACAGTTGACTCCTTCGTTGCTCTGCTGCTGCGATGTTGCGCT 239
||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 216 GATGTTTCACCGAGTCCAACAGTTGACCCCTTCATTGCTCTGCTGCTGCGATGTTGCGCT 275
Query 240 TTTGGTTGTCACAGGTATCTTTCAACAATACTTTGTTTATCAAGTCCAGAAAATACGTCT 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTTGGTTGTCACAGGTGTCTTTCAACAATACTTTGTTTATCAAGTCCAGAAAATACGTCT 335
Query 300 CCAGGGTTATTACAGTTTCAGTCAAAAGTTGAAGCATGTTGTTCGTCTGCCATTTGCAAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CCAGGGTTATTACAGTTTCAGTCAAAAGTTGAAGCATGTTGTTCGTCTGCCATTTGCAAT 395
Query 360 CGCTGCATATGGAACCGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACAT 419
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGCTGCATATGGGACTGCTGCAATGCTTCTTGTGATAGTGTGGAGGCCTCAAATCCACAT 455
Query 420 ACTTTCTATTTCTTCTTTACAACGGATCATCATGTTGGTTGAAGCAGTGTGCGCTGGCTT 479
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 456 TCTTTCTATTTCTTCTTTGCAACGGATCATCATGTTGGTTGAAGCAGTGGGCGCTGGCTT 515
Query 480 TTTCATGGGTTTATACATCGGTTATGTGCACCAATACAATTCCGTTAATTCCCGGCCAGA 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 516 TTTCATGGGTTTATACATCGGTTATGTGCACCAATACAATTCCGTGAATTCCCGGCCAGA 575
Query 540 TGTCTTGAAGTCATTATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TGTCTTGAAGTCATTATATTCTCCTCTTCAGCCGTCAAGTTCTATGGAAGGTTTGAGGTA 635
Query 600 TTATGAAGGCCGGCTTTCTGATCAGCAAACGGCTTTGTTACAATATCAACGTGAAAATCT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 636 TTATGAAGGCCGGCTTTCTGATCAACAAACGGCTTTGTTACAATATCAACGCGAAAATCT 695
Query 660 CCATTTTCTAAGCGAGGAGATTCTGTCCTTGCAAGAGAAACTTAGCAAATATGAACAATC 719
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 696 CCATTTTCTAAGCGAGGAGATTCTGTGCTTGCAAGAGAAACTTAGCAAATATGAACAATC 755
Query 720 TGATGATGGAAGCACACCTCAAGTTGATCTCGCACATCTTTTAGCTGCTCGAGATCAAGA 779
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 756 TGATGATGGAAGCACACCTCAGGTTGATCTCGCACATCTTTTAGCTGCTCGAGATCAAGA 815
Query 780 GCTAAGGACACTTTCAGCTGAGATGAATCAGCTTCAGTCTGAGCTACGGCTTGCTCGTTC 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GCTGAGGACACTTTCAGCTGAGATGAATCAGCTTCAGTCTGAGCTACGGCTTGCTCGTTC 875
Query 840 TTTGATAGCCAAGAGAGATGCAGAGGTGCAGCGTGTCAACAGTACCAACAATCAGTATAT 899
||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 876 TTTAATAGCCGAGAGAGATGCAGAGGTGCAGCGTGTCAACAGTACCAACAACCAGTATAT 935
Query 900 TGAAGAAAATGAAAGGCT-ACGTGCAATCTTGAGCGAATGGAGCATGCGGGCAGCAAATC 958
|||||||| ||||| || | | ||||| ||||| |||||||||||||||||||| ||||
Sbjct 936 CGAAGAAAACGAAAGACTGAGG-GCAATTTTGAGTGAATGGAGCATGCGGGCAGCGAATC 994
Query 959 TTGAGAGAGCTTTGGAAGTAGAGCGGATGTCGAACTCAGAACTACAGAAAGAAGTAGCCA 1018
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
Sbjct 995 TTGAGAGAGCTTTGGAAGTGGAACGGATGTCGAACTCAGAACTACAGAAGGAAGTAGCAA 1054
Query 1019 GCGGGCGTAGAAAGCAGATGCTTGAGACAACAACATCTGAGCAACCTTAA 1068
|| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1055 GCACGCGTAGAAAGCAGATGCTTGAGACAACAACGTCTGAGCAACCTTAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5