BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319343

Length=939
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G06020.1 | Symbols:  | Homeodomain-like superfamily protein ...   601    5e-171


> AT2G06020.1 | Symbols:  | Homeodomain-like superfamily protein 
| chr2:2342535-2346207 FORWARD LENGTH=906
Length=906

 Score =  601 bits (325),  Expect = 5e-171
 Identities = 438/488 (90%), Gaps = 26/488 (5%)
 Strand=Plus/Plus

Query  1    ATgaagaagaaagaaaaaggaaaagaaaTTGTCACTTTCGAAGAAAATCCTAGCACTTCT  60
            ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct  1    ATGAAGAAGCAAGAAAAAGGAAACGAAGTTGTCACTTTCGAAGAAAATCCTAGCACTTAT  60

Query  61   ATTCACCATCTTGATCATTTTGATCATAC-AAAAAAGGTCTCAATGCTTTTAAGTGAGCA  119
             ||   ||||   |||      | |  || |||||| | ||||||| |||||||||||||
Sbjct  61   GTT---CATC---ATC------A-C--ACGAAAAAA-GCCTCAATGGTTTTAAGTGAGCA  104

Query  120  AGAAATAGAGGTAATTCTACAAAAATCTACAAGTAATAAGGAGACATATAAAGAAAATTT  179
            |||||||||||| |||||      | | | ||||||||||||||||||||| ||||| ||
Sbjct  105  AGAAATAGAGGTTATTCT------A-C-A-AAGTAATAAGGAGACATATAATGAAAAATT  155

Query  180  ACAAAAATCTAAGAAAGACAATGCTCAGAAAGTTGGTATTGAAGAAGGAAATGGTTCATC  239
            | |||||  || |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct  156  AGAAAAAAATACGAAAGAGAATGCTGAGAAAGTTGGTATTGAAGAAGGAAATGGTTCATC  215

Query  240  TTCAAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGCGGTGGTC  299
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  216  TTCAAAGATCACGCCATGCATTTTCTACACATCTGATGAAAAGGCACGATTGAGGTGGTC  275

Query  300  AAGAGACCTTCACGATTGCTTTGTTACTGCTGTGGAAAAACTTGGTGGACCTGACAAAGC  359
            ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct  276  AAGCGACCTTCACGATTGCTTTGTTAATGCTGTGGAAAAACTTGGTGGACCTAACAAAGC  335

Query  360  AACGCCAAAAAGTGTTAAAGAGACAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAA  419
             ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  336  GACGCCAAAAAGTGTTAAAGAGGCAATGGAAGTTGAAGGAATTGCACTTCACCATGTGAA  395

Query  420  GAGTCATCTTCAGAAATTTAGACTTGGAAAGTGTAACATACGGGATGGAACAAATCAATA  479
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  396  GAGTCATCTTCAGAAATTTAGACTTGGAAAGTGTAACATACGGGGTGGAACAAATCAATA  455

Query  480  TATTAGAC  487
            | ||||||
Sbjct  456  TGTTAGAC  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45914010358


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5