BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319345
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-r... 2739 0.0
> AT2G06040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Leucine-rich
repeat, cysteine-containing subtype (InterPro:IPR006553);
BEST Arabidopsis thaliana protein match is: RNI-like superfamily
protein (TAIR:AT5G21900.1); Has 5028 Blast hits to
2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa
- 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other
Eukaryotes - 439 (source: NCBI BLink). | chr2:2352154-2355559
REVERSE LENGTH=2608
Length=2608
Score = 2739 bits (1483), Expect = 0.0
Identities = 2077/2345 (89%), Gaps = 115/2345 (5%)
Strand=Plus/Plus
Query 1 ATGACGATTCTTCGATCTCGCGAAATCCCATCGGTCTCAGCCAAGCCACTCCCTAAACAA 60
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 141 ATGACGATTCTTCGATCTCGCGAAATCCCATCTGTCTCACCCAAGCCACTCCCTAAAGAA 200
Query 61 TCCGACATTGAGCCGTCGACTCCTGCTCGGACACTAGAGCCCGATGTTCACCGTTCGCC- 119
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |||||
Sbjct 201 TCCGACACTGAGCCGTCGACTCCCGCTCGTACACTAGAGCCCGAACTTCACCGCTCGCCG 260
Query 120 ---G-GA-------TGAATTGGGTCTTGTTGATGAACCCACTCACACTACCCGGAGGCGT 168
| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 261 GATGAGACCGCTCCTGAATTGGGTCTTGTTGATGAACCCACTCACACTACCCGGAGACGT 320
Query 169 AGTCTTCGTCTTGCACACCAATTTGACGGCGATGATAGTGTCACTGAAAAAGAGGTTAGT 228
|||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 321 AGTCTTCGTCTTGCACACCAATTTGACGGCGATGATTGTGTCAC---------------T 365
Query 229 GGCGAGAGAAGAGAGTTGAATGTGGATGAAAAGTTTTTGAGTTTAAGGTCAGGGAAGAGA 288
|||| ||||| ||| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 366 ---GAGA-AAGAG-GTT-AGTGTGGATGAAAAGTTTTTGAGTTTGCGTTCAGGGAAGAGA 419
Query 289 GTTGCTAAGAGAGGTGTTGATTATGGAATTGAAGTTGAGTCTAGGATGTTTGATTTCGAT 348
||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||
Sbjct 420 GTTGCTAAGAGAGGTGTCGATTATGGAATTGAAATTGAGTCTAGCAAGTTTGATTTCGAT 479
Query 349 AGCGAA-TTAGGCGGAAGTAG-GAGT-AAACGAAAGAGGGTTTGTGTGGATTTGGTTGAG 405
|| ||||| | |||| | |||| |||| |||||||||||||||||||||||||||
Sbjct 480 -TTAAAGTTAGGAGAAAGT-GCGAGTAAAAC-AAAGAGGGTTTGTGTGGATTTGGTTGAA 536
Query 406 GAAAATATTGGGAGGGATGAATTAGAGAATAGTG-GAGATTTGGGAAAGGCTGTGA-TGG 463
|||| ||||| || | |||||| |||| |||||| | ||||| || || | | || | |
Sbjct 537 GAAACTATTGTGAAGAATGAATCAGAGGATAGTGTG-GATTT-GG-AA-GATAAGAGTAG 592
Query 464 AAGATAGGAGTGGTAGTGGTG--T-GTTA--GGTG-ACTCG--T-TAGTAGAAGTAGAAA 514
|| | || ||| || |||| | |||| || | | | | | ||||||||||||| |
Sbjct 593 TAG-T-GGTGTGTTA--GGTGACTCGTTAGCGGAGAAGTGGTATGTAGTAGAAGTAGAGA 648
Query 515 ATGAGAGTAAGAACAAAGGAAAGGGGATAATGGAAGATTCCTATGGAGAAAGTGATGTGA 574
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ATGAGAGCAATAACAAAGGAAAGGGGATAATGGAAGATTCCTATGGAGAAAGTGATGTGA 708
Query 575 TTTGTGGTGAGAGTTATGAGAAGGC-GAGTAGCTCTATGGGTAGAAGAAAATATACTCGG 633
|||||||| ||||||||||||| || |||||| |||||||||||||||| ||||||| ||
Sbjct 709 TTTGTGGTCAGAGTTATGAGAA-GCAGAGTAGTTCTATGGGTAGAAGAAGATATACTAGG 767
Query 634 GAGGAGAAGGGAAAGGGTGTTATTCAGGTGGAGGATGTCTCTTCTCC---AA---TT-AC 686
|||||||||||||||||| |||| |||||||||||||| |||||||| || || |
Sbjct 768 GAGGAGAAGGGAAAGGGTATTATGCAGGTGGAGGATGTTTCTTCTCCGGTAACGGTTGA- 826
Query 687 GA-T-T-GAAGTTGATGAAGAAGCAATGGAAATTGAGAACTTGATTAACAATGAGGAGCC 743
|| | | |||||||||||||||| ||||||||| |||| |||| |||||| |||| ||||
Sbjct 827 GATTGTCGAAGTTGATGAAGAAGAAATGGAAATCGAGAGCTTGGTTAACAGTGAGAAGCC 886
Query 744 CCCGGTTGTCTCTGTACCAGAATTGGCTGCAG-CGGGGGTTAATGTAGAACAAACGCAGA 802
||||| |||||||||| ||||||||||||| | || || |||||| || ||| ||||||
Sbjct 887 CCCGGATGTCTCTGTAACAGAATTGGCTGC-GACGATGGCTAATGTTGAGCAAGCGCAGA 945
Query 803 ATC---ATAATAGTAATGAGATTGGAAACGGTTCAAGAACTCGGCACTTTCGTGACATTG 859
||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 946 ATCGAGAAAATAGTAATGAGATTGGAAACGATTCAAGAACTCAGCACTTTCGTGACATTG 1005
Query 860 CCA-AGAGAAATGCTTC-CAGATTTGCTCGTTTTGATGCTCAAATGGAGGAAGAAGAGGA 917
|| |||| | ||| || ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1006 -CAGAGAGGATTGC-TCACAGATTTGCTCATTTTGATGCTCAAGTGGAGGAAGAAGAGGA 1063
Query 918 CTTGTCAGATAGAGAGGGTGAACAACAGGTCGAAGATTGGCCTGGTCCTTTCTCTACTGC 977
|||||||||| |||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct 1064 TTTGTCAGATAAAGAGGGGGAGCAGCAGGTCGAAGATTGGCCGGGTCCTTTCTCTACTGC 1123
Query 978 CATGAAGATAATTAAGGACAGAGAAGAGAACACGACTCCATATGTTGGTCTTGGTGTCTC 1037
||||| |||||||||||| |||||||| |||||||||| |||||||| |||| |||||
Sbjct 1124 TATGAAAATAATTAAGGACCGAGAAGAGTACACGACTCCGCATGTTGGTATTGGCGTCTC 1183
Query 1038 CAACAAAGAAAGATCTTCACCAACTATTTGGGTTCCCAAAAGAAACTGTAGTCTT-GCCC 1096
|||||||||||||||||||||||||||||||||||||| ||| |||| |||| || |||
Sbjct 1184 CAACAAAGAAAGATCTTCACCAACTATTTGGGTTCCCAGAAGTAACTTTAGT-TTCCCCC 1242
Query 1097 CTCGGAAGGCTCCATCTCTGCAAGAACTATCTTTGCGAATTCTTGTCAAGAATGCTGATG 1156
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1243 CTCGGAAGGCTCCATCTCTGCAAGAATTATCCTTGCGAGTTCTTGTCAAGAATGCTGATG 1302
Query 1157 CCATCACTTCGCTTGACTATGTTCCAGACACACTGAGGGTCAAACTTTGTCAATTGCTTT 1216
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1303 CCATCACTTCTCTTGACTATGTTCCAGACACATTGAGGGTCAAACTTTGTCAATTGCTTT 1362
Query 1217 GTGATTCTAGGAGAATGGACGTGCATTTTCTTGATCTTCTTGTCCAGGGATCTCCAACAG 1276
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 1363 GTGATTCTAGGAGAATGGACCTACACTTTCTTGATCTTCTTGTCCAGGGATCTCCAACAG 1422
Query 1277 AAATTTGTGTTCCAGATTGCTCATGGCTTACCGAGGAACAATTCACTGAGTGTTTTAAGA 1336
|||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||
Sbjct 1423 AAATTTGTGTTCCAGATTGCTCATGGCTGACCGAGGAAGAGTTCACTGAATGTTTTAAGA 1482
Query 1337 ACTGTGACACCAGCAACTTGATGGTTCTTCAACTCGACCAGTGTGGTCGTTGTATGCCAG 1396
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1483 ACTGTGACACCAGCAACTTGATGGTTCTTCAACTTGACCAGTGTGGGCGGTGTATGCCAG 1542
Query 1397 ATTATGTATTA-CATTCCACCTTAGCAAGGTCACCAAAACAGTTGCCGATGCTATCTTCT 1455
||||| ||||| | || ||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 1543 ATTATATATTACCCTT-CACTTTAGCAAGGTCACCAAAAGTGTTGCCGATGCTATCTACT 1601
Query 1456 TTATCTTTAAGTGGTGCATGCCGGCTTTCCGATGTGGGGCTACGGGC-ACTTGTTTCCTC 1514
|||||| |||||||||||||||||||||||||||||||||||| | | ||| ||||||||
Sbjct 1602 TTATCTATAAGTGGTGCATGCCGGCTTTCCGATGTGGGGCTAC-GACAACTGGTTTCCTC 1660
Query 1515 TGCTCCTGCGATTACATCTATTAATCTCAGCCAATGCTCTCTTCTAACATCATCTAGCAT 1574
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1661 TGCTCCTGCGATTACGTCTATTAATCTCAACCAATGCTCTCTTCTAACATCATCTAGCAT 1720
Query 1575 TGATATGTTATCTGATTCATTGGGGTCAGTTTTAAGGGAACTGTATATCAATGAGTGCCA 1634
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1721 TGATATGTTATCTGATTCATTGGGGTCAGTTTTAAGGGAACTGTATATCAACGAGTGCCA 1780
Query 1635 AAACATCGATATGAAACTTATTGTCTCAGCATTAAAAAAGTTTGAGAAGTTGGAAGTATT 1694
|||||| |||||||| | |||| || ||||||| ||||||||||||||||||||||||||
Sbjct 1781 AAACATTGATATGAAGCATATTCTCGCAGCATTGAAAAAGTTTGAGAAGTTGGAAGTATT 1840
Query 1695 GTCCCTTGCGGATCTTCCTTCAGTCAAGGGTCAGTTCTTGAAGGAGTTTGTTACTGCTAG 1754
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1841 GTCCCTTGCGGATCTTCCTTCTGTCAAGGGTCGGTTCTTGAAGGAGTTTGTTACTGCTAG 1900
Query 1755 AGGACAAACCCTGAAGCAGCTAATTTTGACCAACTCTGGGAAATTAACTGATTCTTCTAT 1814
||| || |||||||||||||| ||||||||||||||| |||| ||| |||||||||||||
Sbjct 1901 AGGTCAGACCCTGAAGCAGCTGATTTTGACCAACTCTCGGAAGTTATCTGATTCTTCTAT 1960
Query 1815 TAAAGCCATCTCTGAAAACTGTCCCAATTTAAGTGTGCTTGACCTGGCTAACGTATGCAA 1874
||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1961 TAAAGTCATCTCTGAAAACTGTCCCAATTTAAGCGTCCTTGACCTGGCTAACGTATGCAA 2020
Query 1875 GCTGACGGATTCTTCACTGGGTTACCTTGCAAATGGCTGTCAAGC-TCTAGAGAAATTGA 1933
|||||| |||||||| ||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 2021 GCTGACAGATTCTTCTCTGGGTTACCTTGCAAATGGCTGTCAAGCGT-TGGAGAAATTGA 2079
Query 1934 TTTTTTGTCGCAACTCTTTCAGGCAAACGCTTCATATGTCTCTCTATAGTGATGAAGCTG 1993
||||| | | || || ||| | | | | || |||||||||||||
Sbjct 2080 -TTTTT-T-G--------TC--GC-AAC-C--C-----T-T-TC---AGTGATGAAGCTG 2112
Query 1994 TAGCTGCATTTGTAGAAACCGCAGGCAGTTCTCTGAAGGAGCTATCACTAAACAATGTTA 2053
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2113 TAGCTGCATTTGTAGAAACCGCAGGTGGTTCTCTGAAGGAGCTATCACTAAACAATGTTA 2172
Query 2054 AGAAGGTTGGCCACAACACGGCCCTAGCACTTGCCAAACATTCAGATAAGCTGCAGATTT 2113
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2173 AGAAGGTTGGCCACAACACGGCCCTAGCACTTGCCAAACATTCAGATAAACTGCAGATTT 2232
Query 2114 TGGATGTATCCTGGTGCCGAGAAATGTCGAACGATTTATTAGGCTACTTTGTCGATAACT 2173
||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 2233 TGGATATATCCTGGTGCCGAGAAATGTCCAACGATTTATTAGGCTACATTGTCGATAACA 2292
Query 2174 GTTCATCTTTGAAAGTGTTGAAGGTCTTTGGATGCACTCAGGTGACCGATGTATTCGTTA 2233
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 2293 GTTCATCTCTGAAAGTGTTGAAGGTCTTTGGATGCAGTCAGGTGACGGATGTATTTGTTA 2352
Query 2234 AAGGTCACTCAAACCCTAATGTCAAGATCTTAGGTTTGAAGATGAATCCCTTCTTGGGCC 2293
||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||| ||||
Sbjct 2353 AAGGTCACTCAAATCCTAATGTCAAGATCTTAGGTGTGAAGATGGATCCTTTCTTAGGCC 2412
Query 2294 ACCTT 2298
|||||
Sbjct 2413 ACCTT 2417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5