BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319369
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07170.1 | Symbols: | ARM repeat superfamily protein | chr2... 2104 0.0
> AT2G07170.1 | Symbols: | ARM repeat superfamily protein | chr2:2975040-2978820
FORWARD LENGTH=2758
Length=2758
Score = 2104 bits (1139), Expect = 0.0
Identities = 1262/1323 (95%), Gaps = 2/1323 (0%)
Strand=Plus/Plus
Query 8 CTAATACACAACAAGTGATTTTTGAGCTGAAGAAGAAGGTTGTTACTGCATTAAACAAGT 67
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 220 CTAATACACAACAAGTGATTTTTGAGCTGAAGAAGAAGGTTGTTATTGCATTAAACAAGT 279
Query 68 TAGCAGATAGAGATACATATCAGAGAGGAGTTGATGAGCTTGAGAAAACTGTTGAGCATT 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TAGCAGATAGAGATACATATCAGAGAGGAGTTGATGAGCTTGAGAAAACTGTTGAGCATT 339
Query 128 TGGCACCGGATAAGATTTCGTGTTTTCTCTCTTGTATATTGGATACTGATTCTGAGCAGA 187
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 340 TGGCACCGGATAAGGTTTCATGTTTTCTCTCTTGTATTTTGGATACTGATTCTGAGCAGA 399
Query 188 AGAGTGCTGTTCGGAAAGAGTGTATTAGGTTGATGGGTACTTTAGCTAGGTTTCATGAGG 247
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 400 AGAGTGCTGTGAGGAAAGAGTGTATTAGGTTGATGGGGACTTTAGCTAGGTTTCATGAGG 459
Query 248 GGCTTGTTGGTCCATATCTTGCTAAGATGGTTTCGAGTATTGTTAAGCGGCTTAAGGATC 307
| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 460 GACTTGTTGGTCCATATCTTGGTAAGATGGTTTCTAGTATTGTTAAGCGGCTTAAGGATC 519
Query 308 CAGATTCTGTTGTGAGAGATGCGTGTATTGAGACAATGGGTGTTTTGGCTTCGAAGATGA 367
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 520 CTGATTCTGTTGTGAGAGATGCGTGTATTGAGACAATGGGTGTTTTGGCTTCCAAGATGA 579
Query 368 GTTGCTATGAAGACCAGAACTATGGGGTGTTTGTTTCCTTGGTTAAACCGCTTTTTGAAG 427
|||| |||||||||||||||| ||| || |||||||||||||| ||||| ||||||||||
Sbjct 580 GTTGTTATGAAGACCAGAACTTTGGTGTTTTTGTTTCCTTGGTGAAACCTCTTTTTGAAG 639
Query 428 CCATTGGTGATCAGAATAAGTATGTGCAGTCAGGTGCTGCCTTATGCTTGGCCAGAGTTA 487
| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 640 CTATTGGTGATCAGAATAAGTATGTGCAGTCTGGTGCTGCCTTATGCTTGGCGAGAGTTA 699
Query 488 TTGATAGCAGTCCTGAAGCTCCAGTTGCGATTATACAACGCATGTTAATGCGGACAGTAA 547
||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 700 TTGATAGTAGTCCTGAAGCTCCAGTTGCGATTATACAACGCATGTTGATGAGGACAGTAA 759
Query 548 AGCTGCTCAATAACTCACATTTCATCGCAAAGCCAGCAGTTATTGAGCTTAATAGAAGTA 607
||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 760 AGCTGCTTAATAACTCGCATTTTATCGCAAAGCCAGCGGTTATTGAGCTTAATAGAAGTA 819
Query 608 TCATCCTGGCTGGTGGGGCAACGCCGAAGAGTGTGTTGTCCTCAGCAATGTCTAGCTTTC 667
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 820 TCATCCTGGCTGGTGGGGCAACGTCGAAGAGTGTGTTGTCCTCAGCAATGTCTAGCTTTC 879
Query 668 AAGATGCCCTTAAAAATAAGGACTGGACTACTCGTAAGGCAGCTTCTGTAGCACTTATGG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 AAGATGCCCTTAAAAATAAGGACTGGACTACTCGTAAGGCAGCTTCTGTAGCACTTATGG 939
Query 728 AAATAGCTGCTACTGGTGAAAAGTTTCTTGGACCTCTGAAGGCTTCCTGCATCTGCTCTC 787
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 940 AGATAGCTGCTACTGGTGAAAAGTTTCTTGGACCTCTGAAGGCGTCCTGCATCTGCTCTC 999
Query 788 TTGAATCATGTCGCTTTGATAAAGTGAAACCAGTGAGGGACTCAGTTATCCTTGCCTTGC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TTGAATCATGTCGCTTTGATAAAGTGAAACCAGTGAGGGACTCAGTTATCCTTGCCTTAA 1059
Query 848 AATATTGGAAAGGTGTCCCTGGGTCTGATAGTCCAGAGCCATCTGAAACTGGATCCTCTG 907
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1060 AATATTGGAAAGGTGTCCCTGGGTCTGATAGTCCAGAGCCATCTGAAACTGAATCCTCTG 1119
Query 908 TAAAAGAAAGTTATAATGGAGCTCGAGAGAGTAGTGAACTTTTCAGCACCAGTGACTCTA 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1120 TAAAAGAAAGTTATAATGGAGCTCGAGAGAGTAGTGAACTTTTCAGCACCAGTGACTTTA 1179
Query 968 AAGTGAAGGATGCTACGTCTATCAAATATGTAACGGATTTGGCAAGGAAAAAGGTTCCGG 1027
|||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1180 AAGTGAAGGATGGTATGTCTATCAAATATGTAACGGATGTGACAAGGAAAAAGGTTCCGG 1239
Query 1028 TTTCTGCCAGGCAAGCACCTACACGTTACAATGACGACCCTCGAAAGTCTAAACAAGATA 1087
| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1240 TCTCTGCCAGGCAACCACCTACACGTTACAATGACGACCCTCGAAAGAGTAACCAAGATG 1299
Query 1088 ATTGGCATATTGACATTGCAGTCCCAGAATCTTCTATTGTCTCCAAGGTTGATCTTCACA 1147
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1300 ATTGGCATATTGAAATTGCAGTCCCAGAATCTTCTTTTGTCTCCAAGGTTGATCTTTACA 1359
Query 1148 ATGAAGAATCTGAAGGCAGTTGCATCACCAAGACGTTTGCAGAAGCGACAACCATGCCAG 1207
|||||||||| || |||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 1360 ATGAAGAATCAGAGGGCAGTTGCATCACCAAGACGTTTGCAGAAACGACAAACACGCCAG 1419
Query 1208 GAGTGACATATGAGTACATTCCAATAGA-GGATAAAGCAGATTGCTATGTAACAGGCGGA 1266
|||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 1420 AAGTGACATATGAGTACATTCCAAT-GAAGGATAAAGCAGATAGCTATGTAACAGGCGGA 1478
Query 1267 GTCAATGAAAGTGATGATATCAAGTCTATTACAGTTTCATCATGCAGTTTCAGGGCAAGT 1326
|||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1479 GTCAATGAAAACGATGATATCAAGTCTATTACAGTTTCATCAAGCAGTTTCCGGGCAAGT 1538
Query 1327 GGT 1329
|||
Sbjct 1539 GGT 1541
Score = 795 bits (430), Expect = 0.0
Identities = 478/502 (95%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 1832 AGGACATTTGGAACAACATTGGACAGGGAAGACAAACATTGATCCAGACCCGGACATCTT 1891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2116 AGGACATTTGGAACAACATTGGACAGGGAAGACAAACATTGATCCAGACCCGGACATCTT 2175
Query 1892 CTGATTCAATTCAAAGCATAAGACAACCTTATGCGGAGGTGATGAGTGGATCAAGAAAAC 1951
||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||
Sbjct 2176 CTGATTCAATTCAAAGCATTAGACAACAGTATGCAGAGGTGATGAGTGGAACAAGGAAAC 2235
Query 1952 CGGTGACAGGTGTTTCTTGTGAAGAAGTGGTTGAATCAGAGTATCTAGATGTGCTTTCTT 2011
| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 2236 CAGTGACAGGTGTTTCTTGTGAAGATGTGGTTGAATCAGAGTATCTACAAGTGCTTTCTT 2295
Query 2012 CTGGTGATGAGCTAGCACTTGTTGAGCTTCTTGACAGAACTGGCCCTGTGCTGGAGAGTA 2071
| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 2296 CCGGTGATGAGCTTGCACTTGTTGAGCTTCTTGACAGAACAGGCCCGGTGCTGGAGAGTA 2355
Query 2072 TGTCATCACAGACCATAAATGAAATTCTCAGTATTCTCCTGTCATACCTCCTCGAACGAA 2131
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2356 TGTCATCACAGACCATAAATGAAATTCTCAGTATTCTATTGTCATACCTCCTAGAACGAA 2415
Query 2132 GATTCATGAATTCAATACTTCCTTGGTTGCATCAGGTCGCTGACTTGAGCACTACAAATG 2191
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2416 GATTCATGAATTCAATACTTCCTTGGCTGCATCAGGTCGCTGACTTGAGTACTACAAATG 2475
Query 2192 TAGCAAACTATCTTATTCCATCTGCGAGAAAGAGAGCTCAAGTGTTGTCTGCAATTCAGG 2251
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2476 GAGCTAATTATCTTATTCCATCTGCGAGAAAGAGAGCTCAAGTGTTGTCTGCAATTCAGG 2535
Query 2252 AGGCTTCAGGCATGGACTTTTCGAATCTTGCTGAGAGGAGAGCAGTTACTCAAATAGCAA 2311
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2536 AGGCTTCAGGCATGGACTTTTCAAATCTTGCTGAGAGGAGAGCAGTTACTCAAATAGCTA 2595
Query 2312 TGAAGTTGCGCAAACTATGGGG 2333
||||||||||||||||||||||
Sbjct 2596 TGAAGTTGCGCAAACTATGGGG 2617
Score = 747 bits (404), Expect = 0.0
Identities = 471/503 (94%), Gaps = 6/503 (1%)
Strand=Plus/Plus
Query 1329 TGAAGAAACTGATTCGGAAGAGCAGCCATTCTCAACAAAAGTGAAGGATCGTACAAGCCT 1388
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1580 TGAAGAAACTGATTTGGAAGAGCAGCCATTCTCAACCCAAGTGAAGGATCGTACAAGCCT 1639
Query 1389 TGACTCTTCTGTAACAGTGTCAAGCTCTCAAATCAATCATGACTGCTGTGCTAAGATTGC 1448
|||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1640 TGACTCTTTTGTAACAGTGTCGAGCTCTCAAATTAATCATGACTGCTGTGCTAAGATTGC 1699
Query 1449 AAATGAAATGGCTTCTGTACGTAAACAACTCTCAGATATTGAGGATAAACAGTCACGTTT 1508
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1700 AAATGAAATGGCTTCTGTACGTAAACAACTCTCAGATATTGAAAATAAACAGTCACGTTT 1759
Query 1509 GATAGATCAGCTACAGGCCTTTTCAACAGGAATAATGAACAACTTTTCGGTTCTTCAATC 1568
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 GATAGATCAGCTACAGGTCTTTTCAACAGGAATAATGAACAACTTTTCGGTTCTTCAATC 1819
Query 1569 TAAGGTGTCAAGCTTAGAATATGCAGTTGAGGGGATAGCTCAGAACGTTGTCTTGCATTC 1628
||||| ||||||||||| |||||||| ||||||||||||||||||| || |||||||||
Sbjct 1820 CAAGGTATCAAGCTTAGAGTATGCAGTGGAGGGGATAGCTCAGAACGCTGCCTTGCATTC 1879
Query 1629 AGATATATCAAACTCCAATTTTGTGAAGCACAACCAAGGTAGTACCCTGTCACCGAGGCT 1688
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1880 AGATATATCAAACTCCAATTTTGTGAAGCACAACCAAGGTAGTACCATATCACCGAGGCT 1939
Query 1689 CTCTAGTTGCACTTCAAGAACTTCTACGGATATCCGCAATCGGCAATCTACATTATCCAC 1748
||||| || || ||||||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1940 GTCTAGCTGTACGTCAAGAACTTCGACGGATATCCGCAATCGACAATCTACACTATCCAC 1999
Query 1749 TTCCAAGTACTCAATGGCAAGGGAGAACAAAACACATATAAGAAGCAGACTAAATGAATC 1808
|||||||||||||| || | |||||||||||||| ||||||||||||||||||||||
Sbjct 2000 TTCCAAGTACTCAA-GG---G--AGAACAAAACACATGTAAGAAGCAGACTAAATGAATC 2053
Query 1809 ACATGGCATGGAGAAGACACGGA 1831
||| |||||||||||||||||||
Sbjct 2054 ACAGGGCATGGAGAAGACACGGA 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119326695465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5