BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319379
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00570.1 | Symbols: ORFX | Sec-independent periplasmic prote... 649 0.0
AT2G07716.1 | Symbols: | pseudogene, similar to orfx, blastp m... 621 1e-177
> ATMG00570.1 | Symbols: ORFX | Sec-independent periplasmic protein
translocase | chrM:157491-158351 FORWARD LENGTH=861
Length=861
Score = 649 bits (351), Expect = 0.0
Identities = 355/357 (99%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 1 ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC 534
Query 61 ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT 594
Query 121 CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA 654
Query 181 GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT 714
Query 241 TTGATAATAGAGTTGGCTATTTTTGTGGCATTGATTGTACAAGTTCGTGAAGAGGGCTGG 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 715 TTGATAATAGAGTTGGCTATTTTTGTGGCATCGATTGTACAAGTTCGTGAAGAGGGCTGG 774
Query 301 ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGaaaaaaaaGAAGAGTAGccccccc 357
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGAAAAAAAATAAGAGTAGCCCCCCC 831
> AT2G07716.1 | Symbols: | pseudogene, similar to orfx, blastp
match of 85% identity and 5.5e-116 P-value to GP|287897|emb|CAA42649.1||X60046
orfx {Oenothera berteriana} | chr2:3413955-3414838
FORWARD LENGTH=884
Length=884
Score = 621 bits (336), Expect = 1e-177
Identities = 338/339 (99%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 1 ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 ATGATCAAGTTACAACCTAAGATCTATGACCATATTATGTTAACTGTTCGTATTTCGTTC 605
Query 61 ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATTCCATCGGTATGCTCCCAGGTACCTGTAATTGTGATCTGTTTGCCAGAACCAAGGGGT 665
Query 121 CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTTTCTTTGGAAACCTTCACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACA 725
Query 181 GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 GCTGCTCTTTCCACACCTCCGGATATCTGGTGCCAAATCGTCGCCCGTTTCCTTATTTCT 785
Query 241 TTGATAATAGAGTTGGCTATTTTTGTGGCATTGATTGTACAAGTTCGTGAAGAGGGCTGG 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 786 TTGATAATAGAGTTGGCTATTTTTGTGGCATCGATTGTACAAGTTCGTGAAGAGGGCTGG 845
Query 301 ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGaaaaaa 339
|||||||||||||||||||||||||||||||||||||||
Sbjct 846 ACGAGTGGAATGAGGGAGAGCGGCTCGATCGAGAAAAAA 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16889963664
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5