BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319380
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
ATMG00560.1 | Symbols: RPL2 | Nucleic acid-binding, OB-fold-lik... 1895 0.0
AT2G07715.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1642 0.0
> ATMG00560.1 | Symbols: RPL2 | Nucleic acid-binding, OB-fold-like
protein | chrM:154744-157345 FORWARD LENGTH=1050
Length=1050
Score = 1895 bits (1026), Expect = 0.0
Identities = 1047/1056 (99%), Gaps = 6/1056 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 60
Query 61 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 120
Query 121 CTGCGAATAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 180
Query 181 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 240
Query 241 aaaaaaaTGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAAAAATGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 300
Query 301 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 360
Query 361 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 420
Query 421 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 480
Query 481 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACT 540
Query 541 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 600
Query 601 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 660
Query 661 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 720
Query 721 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 780
Query 781 GGGCATAACAAATCGAAGCCGAAGACGGATCAAGGTAACTTGCCTGCCAAGCCGATAGGC 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 GGGCATAAAAAATCGAAGCCGAAGACGGATCAAGGTAACTTGCCTGCCAAGCCAATAGGC 840
Query 841 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 900
Query 901 GTCGATCGTGCACCTGTCGTCAACACTTATATAATAGCCAGTCATCAATTAGAAGCAGGC 960
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 901 GTCGATCGTGCACCTGTC---A-C--TTATATAATAGCCAGTCATCAATTAGAAGCAGGC 954
Query 961 AAAATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AAAATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCTCCTTCTTGCAATCCGCC 1014
Query 1021 CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGA 1056
||||||||||||||||||||||||||||||||||||
Sbjct 1015 CAGAATGACCATCCTAAGCCCTTATTCACTGTGTGA 1050
> AT2G07715.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:3410597-3413161 FORWARD LENGTH=2170
Length=2170
Score = 1642 bits (889), Expect = 0.0
Identities = 901/907 (99%), Gaps = 0/907 (0%)
Strand=Plus/Plus
Query 1 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 ATGAGACCAGGGAGAGCAAGAGCACTTAGACAATTCACTTTGAGTACAGGAAAGTCTGCT 593
Query 61 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGCTCGAAGCGATTG 653
Query 121 CTGCGAATAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CTGCGAAGAATTGATCTGAAACGAAGCACTTCCTCTATGGGCATTGTAGAGAGTATAGAA 713
Query 181 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TATGACCCTAATCGTTCTTCTCAGATCGCTCCAGTACGATGGATCAAAGGGGGCTGCCAG 773
Query 241 aaaaaaaTGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAAAAAATGAACACGATCGAGAAGTTCGCTCCGCCGCGCAAGATCCTCGAACCTACCACG 833
Query 301 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AACACCATCAGCGGCCTCTTTTCGTTCTCTTTCCTGCCCGGGAAGGTGGATAAAAGAAAG 893
Query 361 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GTAGCTTGCTTCTCTCCTGGACTGATGGCCGCTTATGTAGTGGTCGGCCTTCCTACCGGA 953
Query 421 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATGCCTCCTTTGTCTTCGTCTAAGAGCGCCTTTGCTAGTAAGGGCGCAGGAAGCACAAAA 1013
Query 481 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTCCAAAGGCCAAGAGAGAGACT 540
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1014 ACTTTAGTGAAGGACGTCTTCTTCTCTGCCTTCTCCTCTTTAAAGGCCAAGAGAGAGACT 1073
Query 541 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GCATCCCTTGCCTTCGCTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAG 1133
Query 601 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CCCGCTTTCTTCGCTCCGCGAATGAGACAGAAAGTGAGAGGAAAAAGCACGTTCTCTCTT 1193
Query 661 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGCGAGGTCCAAAAGGGGAGAACGCATAGCATTCTCTGGGCACATAGGATCAAAGGTAAA 1253
Query 721 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GCAGGGCTTTCTTGGCAGAGTTTTAGGCGGCAAGATACTTTAGGGCTTGTTGGAGCTGCT 1313
Query 781 GGGCATAACAAATCGAAGCCGAAGACGGATCAAGGTAACTTGCCTGCCAAGCCGATAGGC 840
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1314 GGGCATAAAAAATCGAAGCCGAAGACAGATCAAGGTAACTTGCCTGCCAAGCCAATAGGC 1373
Query 841 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GAAAGGGCGAAGCAACTCAAAGCTCTCCGGGGTTTGAGGGCGAAGGATGGAGCGTGCAAA 1433
Query 901 GTCGATC 907
|||||||
Sbjct 1434 GTCGATC 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5