BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319381

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G07714.1 | Symbols:  | transcription factor-related | chr2:3...  1086    0.0  
  ATMG00550.1 | Symbols: ORF160 | hypothetical protein | chrM:151...   887    0.0  


> AT2G07714.1 | Symbols:  | transcription factor-related | chr2:3407671-3408506 
REVERSE LENGTH=591
Length=591

 Score = 1086 bits (588),  Expect = 0.0
 Identities = 590/591 (99%), Gaps = 0/591 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATAACTCTGGAGGAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATCACTCTGGAGGAT  60

Query  61   GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA  120

Query  121  TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT  180

Query  181  TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT  240

Query  241  TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG  300

Query  301  AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC  360

Query  361  CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA  420

Query  421  TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG  480

Query  481  GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC  540

Query  541  TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA  591
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA  591


> ATMG00550.1 | Symbols: ORF160 | hypothetical protein | chrM:151265-151747 
REVERSE LENGTH=483
Length=483

 Score =  887 bits (480),  Expect = 0.0
 Identities = 483/484 (99%), Gaps = 1/484 (0%)
 Strand=Plus/Plus

Query  79   ATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGT  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGT  60

Query  139  TACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCG  198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCG  120

Query  199  TTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCC  180

Query  259  AATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACT  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACT  240

Query  319  ACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGA  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGA  300

Query  379  ATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGT  438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  ATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGT  360

Query  439  ACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGT  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGT  420

Query  499  CGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGT  558
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  421  CGGAAGTTTGCCCTCCCCCTCCC-TTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGT  479

Query  559  ATGA  562
            ||||
Sbjct  480  ATGA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28432527202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5