BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319381 Length=591 Score E Sequences producing significant alignments: (Bits) Value AT2G07714.1 | Symbols: | transcription factor-related | chr2:3... 1086 0.0 ATMG00550.1 | Symbols: ORF160 | hypothetical protein | chrM:151... 887 0.0 > AT2G07714.1 | Symbols: | transcription factor-related | chr2:3407671-3408506 REVERSE LENGTH=591 Length=591 Score = 1086 bits (588), Expect = 0.0 Identities = 590/591 (99%), Gaps = 0/591 (0%) Strand=Plus/Plus Query 1 ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATAACTCTGGAGGAT 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATCACTCTGGAGGAT 60 Query 61 GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA 120 Query 121 TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT 180 Query 181 TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT 240 Query 241 TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG 300 Query 301 AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC 360 Query 361 CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA 420 Query 421 TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG 480 Query 481 GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC 540 Query 541 TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA 591 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA 591 > ATMG00550.1 | Symbols: ORF160 | hypothetical protein | chrM:151265-151747 REVERSE LENGTH=483 Length=483 Score = 887 bits (480), Expect = 0.0 Identities = 483/484 (99%), Gaps = 1/484 (0%) Strand=Plus/Plus Query 79 ATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGT 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCATGGTTTGGTAAATGGGGT 60 Query 139 TACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCG 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCATTATCACAGGGCAATTGCG 120 Query 199 TTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCC 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAATTTCAGAGAGAATAAAGCC 180 Query 259 AATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATGAGCGAGATCCAGCTGACT 240 Query 319 ACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGA 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCCCGAGCCCCGCCCATCAGA 300 Query 379 ATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCATCGATGAAAGCGTATGGT 360 Query 439 ACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAGGAGAAATCAGTGAAATGT 420 Query 499 CGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGT 558 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 CGGAAGTTTGCCCTCCCCCTCCC-TTACAGGCTTGCTTTCACTTCCCTTTCCGTAGTAGT 479 Query 559 ATGA 562 |||| Sbjct 480 ATGA 483 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28432527202 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5