BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319387
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07746.1 | Symbols: | pre-tRNA | chr2:3276440-3276511 FORWA... 134 1e-30
ATMG00950.1 | Symbols: TRNQ | tRNA-Gln | chrM:254505-254571 REV... 124 7e-28
> AT2G07746.1 | Symbols: | pre-tRNA | chr2:3276440-3276511 FORWARD
LENGTH=72
Length=72
Score = 134 bits (72), Expect = 1e-30
Identities = 72/72 (100%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 389 TGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATC 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATC 60
Query 449 CTTTTACTCCAG 460
||||||||||||
Sbjct 61 CTTTTACTCCAG 72
> ATMG00950.1 | Symbols: TRNQ | tRNA-Gln | chrM:254505-254571 REVERSE
LENGTH=67
Length=67
Score = 124 bits (67), Expect = 7e-28
Identities = 67/67 (100%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 394 TATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCGGCATGCAAAGGTTCGAATCCTTTT 60
Query 454 ACTCCAG 460
|||||||
Sbjct 61 ACTCCAG 67
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5