BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319392

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00890.1 | Symbols: ORF106D | hypothetical protein | chrM:23...   588    1e-167
  AT2G07681.1 | Symbols:  | Cytochrome C assembly protein | chr2:...   327    3e-89 


> ATMG00890.1 | Symbols: ORF106D | hypothetical protein | chrM:239636-239956 
REVERSE LENGTH=321
Length=321

 Score =  588 bits (318),  Expect = 1e-167
 Identities = 320/321 (99%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGCACTTGGAACGTTCAGTTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCACTTGGAACGTTCAGTTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCT  60

Query  61   TATAGCTTATGGGGCATTTCACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATAGCTTATGGGGCATTTCACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACA  120

Query  121  GGAAAGAAAAGGTCCAAAGGATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAAAGAAAAGGTCCAAAGGATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAG  180

Query  181  AGTCGAAATGACCTTGGTCCAACCATAGTAGGACTGATTCGTAAGATTCTATCCTATTCT  240
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  181  AGTCGAAATGACCTTGGTCCAACCATAGTAGGACTGATTCGGAAGATTCTATCCTATTCT  240

Query  241  TCTAAAAAGGAGTTCTCTAATTTAACTGGACTTGAAAGCGGTGGATCAAGCCCCCCTTTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCTAAAAAGGAGTTCTCTAATTTAACTGGACTTGAAAGCGGTGGATCAAGCCCCCCTTTT  300

Query  301  TCTTTGGCTGTGTCCAAGTGA  321
            |||||||||||||||||||||
Sbjct  301  TCTTTGGCTGTGTCCAAGTGA  321


> AT2G07681.1 | Symbols:  | Cytochrome C assembly protein | chr2:3287552-3292366 
FORWARD LENGTH=2291
Length=2291

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 177/177 (100%), Gaps = 0/177 (0%)
 Strand=Plus/Plus

Query  20    TTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCTTATAGCTTATGGGGCATTT  79
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1828  TTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCTTATAGCTTATGGGGCATTT  1887

Query  80    CACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACAGGAAAGAAAAGGTCCAAAG  139
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1888  CACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACAGGAAAGAAAAGGTCCAAAG  1947

Query  140   GATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAGAGTCGAAATGACCTTG  196
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1948  GATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAGAGTCGAAATGACCTTG  2004



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5