BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319407

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G12475.1 | Symbols:  | Defensin-like (DEFL) family protein |...   422    1e-117


> AT2G12475.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr2:5068490-5068853 REVERSE LENGTH=258
Length=258

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 248/258 (96%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTATCAGCAAGAAAATGTTAACTGTATTTGTCCTCACTATCCTCTTAGCCGTATCT  60
            ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTATCAGCAAGAAAATGTTAACCACATTTGTCCTCACTATCCTCTTAGCCGTATCT  60

Query  61   TTTGTCCATTGCTCCGATAGAACCTCTGGTTTTGGTATAAATCAAGAGTATGCAAAATGC  120
            ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  61   TTTGTTCATTGCTCCGATAGAACTTCTGGTGTTGGTATAAATCAAGAGTATGCAAAATGC  120

Query  121  TACGACCTAGCTGATTGTCAAAAACCCAAAGTGGACGATGCGGCATGCGAGAGGTTTTGT  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  TACGACCTAGCTGATTGTCAAAAACCCAAAGTGGACGATGCCGCATGCGAGAGGTTTTGT  180

Query  181  GGAGCTAAAAGCTTTTTATTATATGGTAGATGTGATGTTGCTACCAACAAATGTTGTTGT  240
            |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||
Sbjct  181  GGAGCTAAAAGCTTTTTATTATATGGTAAATGTGATACTGCTACCAACAAATGTTGTTGT  240

Query  241  AAGTCTAAGACGAAATAA  258
            ||||||||||||||||||
Sbjct  241  AAGTCTAAGACGAAATAA  258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5