BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319438
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14050.1 | Symbols: MCM9 | minichromosome maintenance 9 | ch... 3158 0.0
> AT2G14050.1 | Symbols: MCM9 | minichromosome maintenance 9 |
chr2:5909178-5913817 FORWARD LENGTH=2003
Length=2003
Score = 3158 bits (1710), Expect = 0.0
Identities = 1864/1940 (96%), Gaps = 3/1940 (0%)
Strand=Plus/Plus
Query 1 ATGGAATCGCCGACACAGACGGCGGAGCACATTGAATCCATGACGGAGTTTCTGGCAAAG 60
||||||||||||||||||||| | |||||||| |||||||||||||||||||| | ||||
Sbjct 63 ATGGAATCGCCGACACAGACGTCTGAGCACATAGAATCCATGACGGAGTTTCTAGTAAAG 122
Query 61 CACTATTCCGATCAGCTCCGCGAAATCTCTCTCTCTTCCGATCCCAAACTCCACTACCCT 120
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 123 CACTACCCCGATCAGCTCCGCGAAATCTCTCTCTCTTCTGATCCCAAACTTCACTACCCT 182
Query 121 CTCTTCATCGAGTACGCAGAACTCGTTGATGATAATCCGTCTCTAGCGCATCTTGTTTTC 180
||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 183 CTCTTCATCGAGTACGCAGAACTCGTTGACGATAATCCGTCTCTAGCGCGTCAAGTTTTC 242
Query 181 TCAAATCCCGAACAGTTTCTTCGTCAATTCAACGATTCAGCCATTTTAGCACACAAAATT 240
||| |||||||||| | |||||| |||||| |||||||||||||| |||| |||||||||
Sbjct 243 TCAGATCCCGAACACTATCTTCGGCAATTCGACGATTCAGCCATTCTAGCTCACAAAATT 302
Query 241 GCGTTGGAGCATATGAAGAAATTTGAGAAGAAGATTGGGATTGAGAAGAGATTTATACAT 300
|| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 303 GCTTTGGAGCATATGAAGAAATTTGAGGAGAAGATTGGAATTGAGAAGAGATTTATACAT 362
Query 301 GTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACTTTCCCGAGTATT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 363 GTTCGTATAAACACTAGTGGATCTCCTCTAGAACGAAGCCCTGAGACATTCCCGAGTATT 422
Query 361 GGCCGGGTTAGAGTAAGGCACCGAGGGATTCTGTTGATGTTGAAAGGTACGGTTATTCGA 420
|||||||||||||||| |||||| ||||||||| ||||||||||||| ||||| ||||||
Sbjct 423 GGCCGGGTTAGAGTAAAGCACCGCGGGATTCTGATGATGTTGAAAGGCACGGTGATTCGA 482
Query 421 TCGGGGGCTGTTAAAATGTATGAGGGAGAAAGGATGTATCGATGCCGAAAATGCAAGCAC 480
|| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 483 TCCGGGGCTGTGAAAATGTATGAGGGAGAAAAGATGTATCGATGTCGAAAATGCAAGCAC 542
Query 481 ATGTTTCCTATTTTCCCTGAGTTGGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 543 ATGTTTCCTATTTTCCCTGAGTTAGAATCAATCAACTCTATTGTGAAACCGCCTTTTTGT 602
Query 541 CCTTCTCAGCGGTCAAAATCTTGTGAAGGCACAAACTTTGATCCTGTTGATGATACAGTA 600
|||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 603 CCTTCTCAGCGGTCAAAAGCTTGTGAGGGCACAAACTTTGATCCTGTAGATGATACAGTA 662
Query 601 ACACGCCACGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGT 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ACACGCCATGATTATCAAGAAATCAAAATCCAAGAAAATACTCAGGTTTTAGGTGTTGGT 722
Query 661 GTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GTTATCCCAAGGTCCATTCTAGTCGTCCTGAAAGATGACCTTGTTGACAATGTTAAAGCT 782
Query 721 GGAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCATGACTTGAAAGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GGAGATGATGTTGTTGTCTCTGGAATCTTGACTTCAAAATGGTCTCATGACTTGAAAGAT 842
Query 781 GTTCGCTGTGACCTTGAACCTATGTTGATTGCCAATCATGTCAGAAGAACTAATGAGCTC 840
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTTCGTTGCGACCTTGAACCTATGTTGATTGCCAATCATGTCAGAAGAACTAATGAGCTG 902
Query 841 AAATCAGAAATCAATATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCAC 900
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 AAATCAGAAATCGATATATCTGATGATTTGATCGAGAAGTTCAAGAACTTTTGGAGCCAC 962
Query 901 TTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTCAGAGATACCCCTTTGAAAGGGAGAAATGCTATCTTACGAGGTATCTGCCCCCAAGTC 1022
Query 961 TTCGGACTCTTCACTGTTAAGCTTGCAGTTGCCTTGACACTCATTGGAGGTGTGCAACAT 1020
|| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1023 TTTGGACTCTTCACTGTTAAACTTGCAGTTGCTTTGACACTTATTGGAGGTGTGCAACAT 1082
Query 1021 GTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTCTTATTGGTGATCCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTTGATGCTTCTGGTACAAAAGTACGGGGAGAATCTCACTTGCTTCTTATTGGTGATCCA 1142
Query 1081 GGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTTATC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1143 GGCACTGGAAAATCGCAGTTCTTGAAGTTTGCTGCAAAACTAAGCAACAGAGCTGTAATC 1202
Query 1141 ACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAG-A 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1203 ACAACGGGACTAGGAAGCACAAGTGCTGGATTGACTGTAACTGCAGTGAAGGATGGAGGA 1262
Query 1200 G--TGGATGTTGGAAGCTGGGGCCCTTGTTCTTGCAGATGGTGGACTTTGCTGTATTGAT 1257
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1263 GAGTGGATGTTGGAAGCTGGGGCTCTTGTTCTTGCAGATGGTGGACTTTGCTGCATTGAT 1322
Query 1258 GAATTTGATAGCATGAGAGAGCATGACAGAGCAACCATACATGAAGCAATGGAGCAACAA 1317
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1323 GAATTTGATAGCATGAGAGAGCATGACCGAGCAACCATACATGAAGCAATGGAGCAACAA 1382
Query 1318 AGTATAAGTGTTGCCAAGGCTGGCCTTGTAACAACTCTTAGCACAAAGACAATCGTCTTC 1377
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1383 AGTATAAGCGTTGCCAAGGCTGGCCTAGTAACAACTCTTAGCACAAAGACAATCGTCTTC 1442
Query 1378 GGTGCAACAAATCCTAAAGGACAATATGAGCCCGATCAATCTCTTTCTGTCAATACTGCA 1437
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1443 GGTGCAACCAATCCTAAAGGACAATATGATCCCGATCAGTCTCTTTCTGTCAATACTGCA 1502
Query 1438 CTTTCCGGTCCATTATTGAGCAGGTTTGACATTGTACTTGTTCTCTTAGATACAAAAAAT 1497
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 CTTTCCGGTCCCTTGTTGAGCAGGTTTGACATTGTACTTGTTCTCTTAGATACAAAAAAT 1562
Query 1498 CCCGAATGGGATGCAGTTGTATCCTCTCACATCCTTGCCGAGGTGCAAATAGAGCAAGGC 1557
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1563 CCTGAATGGGATGCAGTTGTATCTTCTCACATCCTTGCCGAGGTGCAAATAGAGCAAGAC 1622
Query 1558 AGAGATGTCGATGATCTGACAACTATTTGGCCACTACCGATGCTTCAAAGATACATTCAG 1617
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGAGAGGTCGATGATCTGACAACTATTTGGCCACTACCGATGCTTCAAAGATACATTCAG 1682
Query 1618 TTTGTGAAAAGAAACTTCAGGCCTGTCCTATCAAAGGAAGCAGAAGAAATTATTTCAAGT 1677
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1683 TTTGTGAAAAAAAACTTCAGACCTGTCCTATCAAAGGAAGCAGAAGAAATAATTTCAAGT 1742
Query 1678 TATTATCGACTCCAAAGAAGATCTTCAACTCATAATGCAGCAAGAACAACCGTGCGGATG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TATTATCGACTCCAAAGAAGATCTTCAACTCATAATGCAGCAAGAACAACCGTGCGGATG 1802
Query 1738 TTGGAAAGCTTGATACGTTTGGCTCAAGCTCATGCAAGGCTTATGTTCAGAAATGAGGTC 1797
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 TTGGAAAGCTTAATCCGTTTGGCTCAAGCTCATGCAAGGCTTATGTTCAGAAATGAGGTC 1862
Query 1798 ACGCGATTGGATGCCATAACAGCAATCCTATGCATTGAATCATCGATGACCATTTCAGCC 1857
|||||||| |||||||||||||| ||| | |||||||||||||||||||| |||||||||
Sbjct 1863 ACGCGATTAGATGCCATAACAGCTATCTTGTGCATTGAATCATCGATGACTATTTCAGCC 1922
Query 1858 ATTGTAGACAGTATGGGGAATGCGCTTCACTCAAATTTCTCCGAAGAACCAGATCAGGAA 1917
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1923 ATAGTAGACAGTATGGGGAATGCGCTACACTCAAATTTCTCCGAAGAACCAGATCAGGAA 1982
Query 1918 TGTATCCTTTTTCGGCATTA 1937
||||||||||||||||||||
Sbjct 1983 TGTATCCTTTTTCGGCATTA 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98393068200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5