BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319455

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14660.1 | Symbols:  | unknown protein; CONTAINS InterPro DO...   664    0.0  


> AT2G14660.1 | Symbols:  | unknown protein; CONTAINS InterPro 
DOMAIN/s: Uncharacterised protein family UPF0310 (InterPro:IPR002740); 
Has 2761 Blast hits to 2761 proteins in 686 species: 
Archae - 5; Bacteria - 1143; Metazoa - 73; Fungi - 78; Plants 
- 42; Viruses - 0; Other Eukaryotes - 1420 (source: NCBI 
BLink). | chr2:6272491-6273083 FORWARD LENGTH=593
Length=593

 Score =  664 bits (359),  Expect = 0.0
 Identities = 438/474 (92%), Gaps = 14/474 (3%)
 Strand=Plus/Plus

Query  1    ATGGGAAAAACGAAGCAATACTGGTTACTCAAAACAGAGCCAAGTGAGTGGTCATGGTCA  60
            ||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||
Sbjct  16   ATGGGGAAAACGAAGCGATACTGGTTACTGAAAACAGAGCCAAATGAGTGGTCATGGTCA  75

Query  61   GACCAAGAAGCAAACGGCGGGATCAGCAAATGGGACGGTGTCAAGAACAAACAAGCCCAG  120
            ||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  76   GACCAAGAATCAAACGGCGGTATCAGCAAATGGGACGGCGTCAAGAACAAACAAGCCCAG  135

Query  121  AAGAATC-TAAAGTCCATGACTTTAGGAGATCTCTGTTTCTTCTACCACTCAGGAACCAA  179
            ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  136  AAGAATCTTAAA-TCCATGACTTTAGGAGATCTCTGTTTCTTCTACCATTCAGGAACCAA  194

Query  180  AGCTAGATGCGTCGTTGGCGTAGTTGAAGTATCGCGTGAATGGTACACTGATAATG---A  236
            | | ||||||||||||||||| ||||||||||| |||||||||||||||||| |||   |
Sbjct  195  ATCAAGATGCGTCGTTGGCGTGGTTGAAGTATCACGTGAATGGTACACTGATGATGCTGA  254

Query  237  -----T-GAAGGAGAAGGAGCGGTTGATGTTAAAGCGGTTGGAGAGATGAGGAAATGTGT  290
                 | ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct  255  AGGAGTAGAAGGAGAAGGAGCGGTTGATGTCAAAGCGATTGGAGAAATGAGGAAATGTGT  314

Query  291  GGATTTGAAGGAAATGAAAGGAGACAAAGGGATTATTA--AG-GGTTTTGTTTTGTTTAG  347
            ||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||
Sbjct  315  GGATTTGAAGGAAATGAAAGGAGACAAAGGGATTATTACTAAAGGTTTTGTTTTGTTTAG  374

Query  348  ACAACCGAGGTTGTCTGTTGTTCCTGTGGAGGAAGATGTCTGGAAAAAGATTTGTGAATT  407
            ||| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||
Sbjct  375  ACAGCCGAGGTTGTCTGTTGTTCCTGTTGAGGAAGATGTTTGGAATATGATTTGTGAATT  434

Query  408  GGGAAATGGGTTTTGTGGAGATGGTAAGGAAGATTGTGAAAGTAGTGATGATGA  461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  435  GGGAAATGGGTTTTGTGGAGATGGTAAGGAAGATTGTGAAAGTAGTGATGATGA  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5