BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319463
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6... 656 0.0
AT3G16580.1 | Symbols: | F-box and associated interaction doma... 315 7e-85
AT1G47390.1 | Symbols: | F-box and associated interaction doma... 220 2e-56
> AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6300150
FORWARD LENGTH=1472
Length=1472
Score = 656 bits (355), Expect = 0.0
Identities = 489/554 (88%), Gaps = 7/554 (1%)
Strand=Plus/Plus
Query 418 TTGAATGGAACTTTGTATTGGGTTTGTTCTCATGACGAGACCGTTCCCTTGTGCTACCAC 477
|||||||||| ||||||||||||||||| || ||| |||| | ||||||||||||||||
Sbjct 798 TTGAATGGAAATTTGTATTGGGTTTGTTTTCGTGAAAAGACTGATCCCTTGTGCTACCAC 857
Query 478 ATTAGA-AAATTCGATTTTTCGAGC-GGATTATTCATAAGATTTTGTGATCTACCATGCG 535
||| | ||||||| ||| |||| | | | ||| | ||||||||| | ||||| | |
Sbjct 858 ATT-CATAAATTCGGTTTCTCGAACAGCA-TATGGGTGAGATTTTGTAACCTACCTTTTG 915
Query 536 GGAGAAACCATAATAGTAGCGATGCTCTTGTCCTTGGGGTCTTTAGGGGAGATCGGTTTT 595
||||||||||| || | | ||||||||||||||||| |||||||| |||||||||||||
Sbjct 916 GGAGAAACCATGAT-G--GGGATGCTCTTGTCCTTGGTGTCTTTAGAGGAGATCGGTTTT 972
Query 596 CGTTGCTAAAGCAATGCATGGTAACAAAGAAGATTGAGATTTGGGTGACTGTGAACAAGA 655
|||||||||||||||||||||| ||||||||||||||| ||| ||||| | ||||||||
Sbjct 973 CGTTGCTAAAGCAATGCATGGTGACAAAGAAGATTGAGGTTTTTGTGACCGAGAACAAGA 1032
Query 656 TTAACCATGAGGATGGTGATGATGTGGTTTGGATGAATTTCATGACCTTTTCAAGTCCTA 715
||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 1033 TTAACCATGAGAATGGTGATGACGTGGTTTGGAAGAATTTCATGACTTTTTCAAGTCCTA 1092
Query 716 ACTTGCCGGATTTAGTAGACACCGTAACCTACACTGATCCAAGTTACTTCATCGAAGATA 775
||||||| ||||||||||| || |||| | | || ||||||||||||||||||||| ||
Sbjct 1093 ACTTGCCTGATTTAGTAGAGACGGTAAAATTCTCTAATCCAAGTTACTTCATCGAAGGTA 1152
Query 776 AGAGGCTCGTGGTGTGCTCTTGGGACAACACTGGTTACGCTTGGATCTATATATTGGGGG 835
| ||||| |||||||||||| | |||||||||||| ||||||||||||||||| ||||||
Sbjct 1153 AAAGGCTTGTGGTGTGCTCTCGTGACAACACTGGTCACGCTTGGATCTATATACTGGGGG 1212
Query 836 ATAATAAGTTGATCAGTAAAACTCGTATAGATTGTGTTGTTGATCCTTGGCCTTTGCACT 895
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1213 ATAGTAAGTTGATCAGTAAAACTCGTATAGAGTGTGTGGTTGATCCTTGGCCTTTGCACT 1272
Query 896 GTACCTTTGTCCCCAGTTTGGTACCGGTTCCTGCTCGATGCCGAAGAGAAGAACGGGCAG 955
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1273 GTACCTTTGTTCCCAGTTTGGTACCGGTTCCTGCTCCATGCCGAAGAGAAGAACAAGCAG 1332
Query 956 AATTACACGTTTAG 969
||||||| ||||||
Sbjct 1333 AATTACAAGTTTAG 1346
Score = 309 bits (167), Expect = 3e-83
Identities = 193/206 (94%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 11 ATCTGAAGAAGCTTCCATGGGAGTTGATCGAAGAGATACTCTCTCGTGTCCCACCTAAAT 70
||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 265 ATCTGAAAAACCTTCCATGGGAGTTGATTGAAGAGATACTCTCTCGTGTCCCACCTAAAT 324
Query 71 CTCTTGTTCGCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGT 130
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CTCTCGTTCGCTTCAGAACCGTATCGAAACAATGGAACGCTCTTTTCGACGACAAGACGT 384
Query 131 TCATGAACCACCACAGGATGACGTTTCGATTCATCCTAGCAACCGAATCCATGGTTTATT 190
|||| ||| |||||| |||||||||||| || ||| |||||||| |||||| | ||||||
Sbjct 385 TCATCAACAACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATT 444
Query 191 CGGTAAGCATCGATCCCGTGATAGTG 216
||||||||||||||||||||||||||
Sbjct 445 CGGTAAGCATCGATCCCGTGATAGTG 470
> AT3G16580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5647376-5648746 REVERSE LENGTH=1371
Length=1371
Score = 315 bits (170), Expect = 7e-85
Identities = 443/570 (78%), Gaps = 37/570 (6%)
Strand=Plus/Plus
Query 412 GTATCGTTGAATGGAACTTTGTATTGGGTTTGTTCTCATGACGA-GACCGTTCCCTTGTG 470
||||| |||||||||| |||||||| |||| || | ||| | ||| | || | |||
Sbjct 622 GTATCATTGAATGGAAATTTGTATTTGGTTACTTATTTTGA-AACGACTGATCTCGTGTA 680
Query 471 CTACC-ACATTAGAAAATTCGATTTTTCGAGCGGATTATTCAT-AAGATTTTGTGATCTA 528
| ||| | ||| | ||| || ||| |||||||| | || | ||| ||||||||||||
Sbjct 681 CCACCTA-ATT-G-AAA-TCAATTCTTCGAGCGAAAGCGTCGTGAAG-TTTTGTGATCTA 735
Query 529 CCATGCGGGA-G--AAACCATAATAGTAGCGATGCTCTT-GTCCTTGGGGTCTTTAG-GG 583
||||| |||| | ||| | || || |||||| || |||||| |||| ||| | ||
Sbjct 736 CCATGTGGGACGTCGAACTTTCTTA--AG-GATGCT-TTCGTCCTTAGGGT-TTTCGAGG 790
Query 584 GAGATCGGTTTTCGTTGCTAAAGCAATG-CATGGTAACAAAGAAGATTGAGATTTGGGTG 642
||||||| ||||| ||| |||||||||| ||| | |||||||||||||||||||||||||
Sbjct 791 GAGATCGATTTTCATTGTTAAAGCAATGCCAT-GCAACAAAGAAGATTGAGATTTGGGTG 849
Query 643 A-CTGTGAACAAGATTAACCATGAGGATGGT-GATGATGTGGTTTGGATGAATTTCAT-G 699
| | | |||||||||| || | || | || ||||||| ||||| || ||||| |
Sbjct 850 AGC-AAGTACAAGATTAATAATAATCTTGATAGA-GATGTGGAATGGATAAAGTTCATGG 907
Query 700 ACCTTTTCAAGTCCTAACTTGCCGGATTTAGTAGACACCGTAACCTACACTGATCCAAGT 759
| ||||||||||||||||||||||||||||||| | | | || || | ||||||
Sbjct 908 A-AGTTTCAAGTCCTAACTTGCCGGATTTAGTAGATG--G-ATTCGACTCTCAGCCAAGT 963
Query 760 TACTTCATCGAAGATAAGAGGCTCGTGGTGTGCTCTTGGGAC-AACACTGGTTACGCTTG 818
||||| || |||||||| |||||||| |||||||| || || || |||||| |||||
Sbjct 964 TACTTTATTGAAGATAAAAGGCTCGTCGTGTGCTCGTGCAACGAA-ACTGGTCGGGCTTG 1022
Query 819 GATCTATATATTGGGGGATAATAAGTTGATCAGTAAAACTCGTATAGATTGTGTTGTTGA 878
||||||| | || || || |||||||||||||||||||||| || |||| ||| || ||
Sbjct 1023 GATCTATGTTTTCGGAGAAAATAAGTTGATCAGTAAAACTCAAATTGATTCTGTGGTGGA 1082
Query 879 TCCTTGGCCTTTGCACTGTACCTTTGTCCCCAGTTTGGTACCGGTTCCTGCTCGATGC-C 937
|| |||||||| ||||| |||||| | ||||||||||||||||||||| | || || |
Sbjct 1083 TCTTTGGCCTTCACACTGGACCTTTATTCCCAGTTTGGTACCGGTTCCT-C--GA-GCTC 1138
Query 938 GAAGAGAAGAACGGGCAGAATTACACGTTT 967
||||||||||| ||||||||||| ||||
Sbjct 1139 AAAGAGAAGAACCAGCAGAATTACAAGTTT 1168
> AT1G47390.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17379544-17380656 FORWARD LENGTH=1113
Length=1113
Score = 220 bits (119), Expect = 2e-56
Identities = 328/421 (78%), Gaps = 45/421 (11%)
Strand=Plus/Plus
Query 513 AAGATTTTGTGATCTACCATG-CGGGAGAAACCATAATAGTAGCGATGCTCTTGTCCTTG 571
||| |||| |||||||||||| ||||| |||||| || | ||||| |||||| |||
Sbjct 676 AAG-TTTTCTGATCTACCATGTGGGGAG-AACCATCAT--CA-CGATGTTCTTGTTCTTA 730
Query 572 GGGTCTTTAGGGGAGATCGGTTTTCGTTGCTAAAGCAATG-CATGGTAACAAAGAAGATT 630
|| | ||||||| ||||||| |||||||| |||||||||| ||| ||||||||||||||
Sbjct 731 GGATTTTTAGGGAAGATCGGCTTTCGTTGTTAAAGCAATGCCAT-CTAACAAAGAAGATT 789
Query 631 GAGATTTGGGTGACTGTGAACAAGATTA-A--C--CA-T-GAGGA--TGGTG-ATG-ATG 679
|||||||||||||| ||||||||||| | | | | | ||| || || || | |
Sbjct 790 GAGATTTGGGTGACCAAGAACAAGATTAGAAACTGCTCTAGTGGAGATG-TGGATTCA-G 847
Query 680 TGGTTTGGATGAATTTCATG-ACCTTTTCAAGTCCTAACTTGCCGGATTTAGTAGACACC 738
|| ||||||||||||||| | | | ||| || ||||||||||| ||| |||
Sbjct 848 CGGAATGGATGAATTTCATGGAAGTGT-CAACTCTTAACTTGCCGG-TTT--TAG----- 898
Query 739 GTAACCTACACTGATCCAAGTTACTTCATCGAAGATAAGAGGCTCGTGGTGTGCTCTTGG 798
|| | || | | ||||||||||||||| ||||| | |||||| ||||| |||||
Sbjct 899 -TA-C--AC-C----C-AAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGC 948
Query 799 GAC-AACACTGGTTACGCTTGGATCTATATAT-TGGGGGATAATAAGTTGATCAGTAAAA 856
||| || ||||| | |||||||||||| | | ||||||| |||||||||||||||||||
Sbjct 949 GACCAA-ACTGGCCAAGCTTGGATCTATGT-TGTGGGGGACAATAAGTTGATCAGTAAAA 1006
Query 857 CTCGTATAGATTGTGTTGTTGATCCTTGGCCTTTGCACTGTACCTTTGTCCCCAGTTTGG 916
|| ||||||| ||| |||| ||| ||||||||||| |||| |||| ||||||||||||
Sbjct 1007 TTCAAATAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCTTTTTCCCCAGTTTGG 1066
Query 917 T 917
|
Sbjct 1067 T 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5