BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319526
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
AT2G16810.1 | Symbols: | F-box and associated interaction doma... 765 0.0
> AT2G16810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7287412-7288945 REVERSE LENGTH=1534
Length=1534
Score = 765 bits (414), Expect = 0.0
Identities = 959/1210 (79%), Gaps = 85/1210 (7%)
Strand=Plus/Plus
Query 70 AAAACTTGGGTCGCACCAGAGAT-T-CCTCTGGATCTCCTAATCGAAATTCTGACGAGAT 127
||||||||||||||| ||| || | |||| |||||| || ||||| |||||||||||||
Sbjct 214 AAAACTTGGGTCGCA--AGATATATCCCTCAGGATCTACTGATCGAGATTCTGACGAGAT 271
Query 128 TGCCTGCGAAATCTGTGTTGAGATTCAAGTGTGTCTCAAAGTTTTGGTCATCTCTTTTCT 187
| ||| |||| || ||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 272 TACCTCCGAAGTCAGTGATGAGATTCAAGTGTGTCTCAAAGTTTTGGTCATCTCTCTTGT 331
Query 188 CCTCGAGATATTTTCGCAATCGTTTCCTTATGGTCTCATCTCAACGTCATTCTCGTCTTT 247
|||| ||||||||| |||| ||||| || || ||| ||||||||| ||| || ||||||
Sbjct 332 CCTCCAGATATTTTTGCAACCGTTTTCTCATCGTCCCATCTCAACCTCAACCTAGTCTTT 391
Query 248 ACATGT-CTTTTATGGACCTTTACAACGATTCTAAGTCTATGCTTCT-ATCATCCGCTCC 305
|||||| | | | |||| | |||||| | ||||||||| | | ||| |||||| |||||
Sbjct 392 ACATGTGCCTAT-TGGATCGATACAACTACTCTAAGTCTCT-CATCTTATCATCTGCTCC 449
Query 306 AATAAGCAGCACATTTCCGTCCTCCTTAGTATTCGACCAAGATCTGACCATCCGCAAGAT 365
|| ||| | | ||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct 450 AA---GCA-CG--TCTCCGTATTCCTTTGTATTCGACCAAGATCTAACCATCCGTAAGAT 503
Query 366 GGGAGGTTTCATATTGCGCG-TTCTCCGTGGCTTCATCTGCTTCAC-AGTTGACTCTAA- 422
|||||||||| | ||||| | |||| ||||||||||| | ||||| || | | |||
Sbjct 504 GGGAGGTTTCTTCTTGCG-GATTCTTCGTGGCTTCATTTTTTTCACTAGAA-ATT-TAAA 560
Query 423 GCCGCGTATCTATAACCCCACCACCAGACAACTTGTAATCTTACCTGCCATAGAAGAATC 482
| |||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||
Sbjct 561 GGCGCGTATCTATAACCCCACCACTAGACAACTTGTGATCTTACCTACCATAAAAGAATC 620
Query 483 TGTTATCATAGCTGAAGAAGAAGAAGATAATTACGAAATATTCT-TCTTTATGGGCCACG 541
|| ||||||||| | | || || | || | | ||| | ||||| |||| |
Sbjct 621 TGATATCATAGC--A-G--GACCTCCTTA-TAAC-A--TCCTCTAT-TTTATCTGCCATG 670
Query 542 ACCATGTTAAAGATCAGCT-CAAACTACTGTGCACAATTACGACAATG--TCAAACGAT- 597
||| |||||| |||| | | ||||||||| |||||| ||| | | || ||| || ||
Sbjct 671 ACCCTGTTAATGATCGG-TACAAACTACTCTGCACAGTTA-GTTA-TGCATCAGACAATG 727
Query 598 AT--GCAAAAGATAGAA-TCAGAGCTTTGGGTCTTT-GTACTAGAAGCTGGCGGTTCGTG 653
|| |||||| || || |||||||||||| | ||| ||||||||||| || ||||||||
Sbjct 728 ATTTGCAAAATTTA-AAGTCAGAGCTTTGGAT-TTTCGTACTAGAAGCAGGGGGTTCGTG 785
Query 654 GAAAAGGGTTGCAAAGGAGTTTCCTCCTCATCTTCCTACTCCATAT-GAACTGAATATGA 712
||||||||||||||| |||||||||| |||| ||||| | | || | || |||||||||
Sbjct 786 GAAAAGGGTTGCAAATGAGTTTCCTCATCATGTTCCTTCAC-ATCTTGATTTGAATATGA 844
Query 713 ATGGAGTTTTATATTACTTGGCTTGGACTGATATGCATACTTGTGTGCTTGTGAGTTTCG 772
|||||||||| |||| ||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 845 ATGGAGTTTTGTATTTTTTGGCTTGGACTGATCCACATACTTGTATGCTTGTTAGTTTCG 904
Query 773 AC-TTCAGGTCGGAAGAATTCAATATGATTCAAGTACCTCGCAAGGCCGGTGATAAGATC 831
|| || ||||| ||||| ||||||| ||| |||||||| ||||| || || || | | |
Sbjct 905 ACGTT-AGGTCTGAAGAGTTCAATACGATGCAAGTACCACGCAATGCTGGAGACAC-A-C 961
Query 832 CTACCTAGACTTA-AGAAGTGGATG-ACTCAAATAGATTATGCTG-GAAAAGTAGCTGTG 888
||||||||| | ||||| || || | | || |||| |||| || ||| ||||||||
Sbjct 962 -TACCTAGACA-AGAGAAG-GG-TGTAGTTAA-TAGAGTATGGTGAGAAT-GTAGCTGT- 1014
Query 889 T-TTGACTTGACTTATCTCCGAGTGAGGGGTACGGTGGATCTATGGGTAGTGCAAGACTG 947
| |||| || || |||||||||||| |||| | ||||| | ||||| ||| |||| ||
Sbjct 1015 TCTTGATTTCACCGATCTCCGAGTGAATGGTAAGATGGATTTGTGGGTTGTGGAAGA-TG 1073
Query 948 G-AGGAAGAAGGAATGGTTGAGGAAGACTCTGGTTTTGCAGCCTTCTCAGCTGCATCCA- 1005
| |||||||||||||| |||||||||| | ||||||||||| |||||| ||||| |
Sbjct 1074 CCAAGAAGAAGGAATGGTCGAGGAAGACTTTTGTTTTGCAGCCCTCTCAGATGCATTTAG 1133
Query 1006 A--TCTTTGACAATCATAGATTAATAGCAAAAGGAAC-TCTA-AAA-GGCAAGGTTATCT 1060
| || ||| ||| ||| | ||||||||| || |||| ||| |||||||| ||||
Sbjct 1134 ACGTCACTGATAAT-ATA--TGGGCAGCAAAAGGTACATCTATAAAAGGCAAGGTCATCT 1190
Query 1061 TGGTACCGC-GATATTTGGTTTCT-C-CC-TTTTACTTTCTTTGCTACGATCTGCAACTC 1116
||||||| || | ||| ||||| | || ||||||||||| | ||| || |||||| ||
Sbjct 1191 TGGTACCAAAGA-AGTTGTTTTCTTCTCCCTTTTACTTTCTCTACTATGACCTGCAAATC 1249
Query 1117 AATGATTTGAAAAAGGTTGAAATCAAAGGAATACCTGATCGCTGGTTTAGTAAGCATA-A 1175
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| | | |
Sbjct 1250 AATGATTTGAAAAAGGTTGAGGTCAAAGGAATACCAGATCGTTGGTTTAGTAACCCTGTA 1309
Query 1176 CACGGAC-ATATAT-TGTGACATTGAGTTTATGAATCCGAGTGAGAGCATCGA-GTACCT 1232
| |||| | |||| || ||||| ||| ||||| |||| |||||||||||| | ||| ||
Sbjct 1310 -A-GGACCAGATATATG-GACATGGAGCTTATGGATCCAAGTGAGAGCATC-ATGTATCT 1365
Query 1233 TGAAACTTGA 1242
|||||||||
Sbjct 1366 GGAAACTTGA 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61043862720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5