BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319541
Length=2094
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20240.1 | Symbols: | Protein of unknown function (DUF3741)... 2942 0.0
> AT2G20240.1 | Symbols: | Protein of unknown function (DUF3741)
| chr2:8727626-8730500 REVERSE LENGTH=2463
Length=2463
Score = 2942 bits (1593), Expect = 0.0
Identities = 1948/2114 (92%), Gaps = 46/2114 (2%)
Strand=Plus/Plus
Query 1 ATGAAAAAGCTCATTGCTCGAGAAATGTCGAACGAGGTTGTTGAAGATAGACAGAGTTCT 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 227 ATGAAAAAGCTCATTGCTCGAGAAATGTCGAAAGATGTTGTTGAAGATAGACAGAGTTCT 286
Query 61 AATAATGTAGTTGCTAAACTAATGGGTCTAGAGACTTCTACACCAAGGAGCAGATCCAGA 120
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 287 AACAATGTAGTTGCTAAACTAATGGGTCTAGAGACTTCTGCACCAAGGAGCAGATCCAAA 346
Query 121 AGCTCTTCACGCTGTTCGTTGACTTGTGTGGGTAGTAGTAATGAAGCTGGTAAGTTTCAT 180
||||||||||| ||||||||||||||||| | ||||||| |||||| | | |
Sbjct 347 AGCTCTTCACGTTGTTCGTTGACTTGTGT---TGGTAGTAAGGAAGCT-G---G-----T 394
Query 181 AAGCATCATAGAGAAGATGAAATCTGGGATCAGAAGAAGGCGAGGAA--AGGAAAGTGTG 238
|||||||||||||||||||||| |||||||| || |||||||| || || ||
Sbjct 395 AAGCATCATAGAGAAGATGAAACCTGGGATC--AA-AAGGCGAGCAACCTTTCAA--GTA 449
Query 239 ATGGAAGTATGAGTGATAAACACATGGATCTTGTTCGTCGAAAGTTCATGGAAG------ 292
| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 450 AAGCAAGTATGAGTGATAAACAGATGGATCTTGTTCGTCGAAAGTTCATGGAAGCTAAAC 509
Query 293 ---T-G--ACAGATGACAAGCTTCACAGGTCCAGTGAGTTCCAAGAAGCACTCCAAGTGT 346
| | |||||||| | |||||| |||||||||||||| ||||||||||||||||| |
Sbjct 510 ACTTGGTAACAGATGATAGGCTTCATAGGTCCAGTGAGTTACAAGAAGCACTCCAAGTTT 569
Query 347 TAAGTTCTAACAAAGATTTGTTCGTGAAGTTTCTCCAGGAATCAAATTCTTTGTTAT-CT 405
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
Sbjct 570 TAAGTTCTAACAAAGATTTGTTCGTTAAGTTTCTCCAGGAATCAAATTCTTTGTT-TCCA 628
Query 406 CAGCATCTTTCTGACTTTCATCATCCTGTTATTCCTCATCCAGAGGCTAAGCGCATTACG 465
|||||||||||||||||||| | || ||| |||||||||||| |||||||||||||||
Sbjct 629 CAGCATCTTTCTGACTTTCA--A-CCAGTTCCTCCTCATCCAGATGCTAAGCGCATTACG 685
Query 466 GTATTGAGACCTTCAAAGGCTGTTGGTGTTCAAAAATGTTTGGTTGAAGATAGTAAGAAA 525
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 686 GTATTGAGACCTTCAAAGGCTGTTGGTGTTCAGAAATGTTTGGCTGAAGATAGTAAGAAA 745
Query 526 CCAGTTTCTTTGAATCAGGAAACTGGATGGATCGATGATGTGCAGCCAACTCGAATAGTT 585
|||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 746 CCAGCTTCTTTGAATCAGGAAACTGGATGGATCGATGCTGTGCAGCCAACTCGGATAGTT 805
Query 586 GTCTTGAAGCCTAGTCCTGGGAAGTCTCTAGATATAAAGGCTATTGCTTCATCTCCTCCT 645
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 806 GTTTTGAAGCCTAGTCCTGGAAAGTCTCTAGATATAAAGGCTATTGCTTCATCACCTCCT 865
Query 646 TATTTTGATGAGGCTGGAGATGCTGAGACTAGAGAAGTGGCAAAGGAAATTACACGTCAA 705
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 866 TATTTTGATGAGGCTGGAGATGCTGAGACCAGAGAAGTGGCAAAGGAAATTACACGTCAA 925
Query 706 ATACGTGAAACTTTTGAGGGTCACTGCAGAAACGAGACCATttcttcttcttcttcttcA 765
|||||||||||| | |||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 926 ATACGTGAAACTGTGGAGGGTCATTGCAGGAACGAGACCCTTTCTTCTTCTTCTTCTTCC 985
Query 766 GTCTTGTCCAATGGCTATATCGATGATGATTGCTCGTTAAACAGGTCAAATTACGAATAT 825
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 986 GTCTTGTCCAATGGCTATATGGGTGATGATTGTTCGTTAAACAGGTCAAATTACGAATAT 1045
Query 826 CCAGTGGGAAACATTACCAACTCTGAGATCATGTCACCATCATCTAGGCATTCATGGGAC 885
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1046 CTAGTGGGAAATATTACCAACTCTGAGATCATGTCACCATCCTCTAGGCATTCATGGGAC 1105
Query 886 TGTGCAAATAGGTTTGAGAGTCCTTTTTCTTCCTCTTCGTTCAGCCGAGTCTCGTTTTCT 945
|||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1106 TGTGCAAACAAGTTTGAGAGTCCTTTTTCTTCGTCTTCGTTGAGCCGAGTCTCGTTTTCT 1165
Query 946 CCAGACTCATCTGTCTATAGAGAGGCAAAGAAACGGCTTTCTGAGAGATGGGCAATGATG 1005
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 CCAGACTCATCTGTCTACAGAGAGGCAAAGAAACGGCTTTCTGAGAGATGGGCAATGATG 1225
Query 1006 TCACTAAACGAAGACACACAACAACCAAAAAACATCCCAAAGGTCTCAACGGCCTTAGGT 1065
|||||||||| ||||||||| |||||||||||| |||| ||||| ||||||||||||||
Sbjct 1226 TCACTAAACGGAGACACACAGCAACCAAAAAACTTCCCCAAGGTTTCAACGGCCTTAGGC 1285
Query 1066 GAAGTGCTTGCACTTTCAGAGACGAAAGTACCTACCGGATCCAGTGAAGAGAGCAACAAA 1125
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1286 GAAGTACTTGCACTTTCAGAGACGAAAGTACCTACCGGATCCAGTGAAGAGACCAACAAA 1345
Query 1126 GTGAAGCAAGAAACGAGACGATCAATCTCATGCATAGGCAGTGGTCTAGATCAAGTAGAA 1185
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 GTGAAACAAGAAACGAGACGATCAATCTCATGCATAGGCAGTGGTCTAGATCAAGTAGAA 1405
Query 1186 AGCACAAGTGATTCTCTGAATACCCTTGAAAGGTCAAAATCAGTCCCTGAGATTAGGCTC 1245
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1406 AGCACAAGTGATTCTCTGAATATCCTTGAAAGGTCAAGATCAGTCCCTGAGATTAGGCTC 1465
Query 1246 AATGGTGGAACTTCAAAAGCACAAGCTCCCAAAGAGCTTACTGAGTCAAGAAGCTTAAAG 1305
|||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||
Sbjct 1466 AATGGTGGAACTTCAAAAGCGCAAGCTCCCCAAGAGCTTACGGAGTCAAGAAGCTTAAAG 1525
Query 1306 TCATCATGGAAAGTTTCAAGCTTATTCTTCTTCCGGAATAAAAAATCATACAAGGACAAG 1365
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1526 TCATCATGGAAAGTTTCAAGCTTGTTCTTCTTCCGGAATAAAAAATCAAACAAGGACAAG 1585
Query 1366 ACAGATGTACCTTCTCAGTTGGCTATACACCGTGATGCATTTCAACaaaaaaaTATTTTT 1425
||| || ||| ||||| ||||||||||||||||||||||| ||| || || |||||||
Sbjct 1586 ACATTTGCACCGTCTCAATTGGCTATACACCGTGATGCATTCCAAGAACAACGTATTTTT 1645
Query 1426 ACAAGCGAGGGTGATGTGGAAAATGATAACCAGGACCAGCCGAGTCCAGTTTCGGTTTTA 1485
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1646 ACAAGCGAGGGTGATGTGGAAAATGAAAACCAGGACCAGCCGAGTCCAGTTTCGGTTTTA 1705
Query 1486 CAGCCGGCTTTTGAAGAGGAATGTTCTGTGTCAGCAAAGCCAAGGACCACTCAAGGAGAT 1545
||||||||||| |||||||||||||| | ||||| |||||||| |||||||||||||||
Sbjct 1706 CAGCCGGCTTTCGAAGAGGAATGTTCGGGGTCAGTAAAGCCAAAGACCACTCAAGGAGA- 1764
Query 1546 A-AAATGTCTTTGAAATCTAATCTGATTGACAAATCGCCTCCTATTGGGTCAATCTCTCG 1604
| |||||||| ||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 1765 AGAAATGTCTCTGAAATCTAATCTGATTGACAAATCACCTCCTATCGGAACAATCGCTCG 1824
Query 1605 GGTT-TGCTCATGGGAGGATGAGTCATACACA-ACCACAACTAAACCCGCAATAGGAATC 1662
| || | | ||||||||||||||||||||||| || || | |||||||||||| ||||||
Sbjct 1825 GATTCT-CGCATGGGAGGATGAGTCATACACAGAC-ACTAGTAAACCCGCAATGGGAATC 1882
Query 1663 GAGGAAGATGAAAACTGGTATGGCTTCGTCAAAACGCTCTTAACAGCGTCTGGTTTCAGC 1722
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1883 GAGGAAGATGAAGACTGGTATGGCTTCATCAAAACGCTCTTAACAGCGTCTGGTTTCAGC 1942
Query 1723 GGTAGTGACTCGCTTATGACCCGTTGGCACTCACCGGAGAGCCCATTAGACCCATCATTA 1782
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1943 GGTAGTGACTCGCTTATGACCCGTTGGCACTCACTGGAGAGCCCATTAGACCCATCATTG 2002
Query 1783 AGAGACAAATTTGCCAACAAGGAACTCATCAAACGCAGGAAACAGAGATCAACCCGCAAA 1842
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2003 AGAGACAAATTTGCCAACAAGGAACTCATCAAACGCAGAAAACAGAGATCAAACCGCAAA 2062
Query 1843 CTCGTTTTTGACTGTGTTAATGCCATCATAGCTGAGACAACATCAACACTTGCGCACACC 1902
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2063 CTCGTTTTTGACTGTGTTAATGCCATCATAACAGAGACAACATCAACACTTGCGCACACC 2122
Query 1903 GGCTTGACCAAGGGATTTAACATGGTGGAACATGTTTGGACAGCGTTACAGGACTCGGCG 1962
|||||||||||||||||||||||| |||| ||||||||||||| ||||||||| | ||||
Sbjct 2123 GGCTTGACCAAGGGATTTAACATGTTGGAGCATGTTTGGACAGAGTTACAGGAATGGGCG 2182
Query 1963 GTGAGTGACGAGGTTG-TCGGAAAAATGTGGAGTTATGGTCTACAAGTCGAAACAAACAA 2021
|| | ||||||||||| | |||||| ||||||||||||||||||||||||||| |||||
Sbjct 2183 GTTAATGACGAGGTTGCTGGGAAAA-TGTGGAGTTATGGTCTACAAGTCGAAATGAACAA 2241
Query 2022 CATGGGGATTGAAATTGAAGTGATATTGCTGCAAGAGCTAGTTGAAGAAGCAGTCTTTGA 2081
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2242 TTTGGGGATTGAAATTGAAGTGATATTGCTGCAAGAGCTTGTTGAAGAAGCAGTCTTCGA 2301
Query 2082 TCTTA-CTCGATGA 2094
||||| || |||||
Sbjct 2302 TCTTATCT-GATGA 2314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103814727060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5