BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319544
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20208.1 | Symbols: LCR60 | low-molecular-weight cysteine-ri... 339 9e-93
> AT2G20208.1 | Symbols: LCR60 | low-molecular-weight cysteine-rich
60 | chr2:8720790-8721423 FORWARD LENGTH=452
Length=452
Score = 339 bits (183), Expect = 9e-93
Identities = 220/238 (92%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAAA-GCAGCTTCTACACTTGTTCTCCCAATCATCTTCCTTGTTATGTTTGCCTT 59
||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 75 ATGGC-AAAGGCATCTTCTACACTTGTTCTCTCAATCATCTTCCTTGTTATGTTTGCCTT 133
Query 60 AGTTGAGCAAAATATGGGATGCACAGCGAGTATGGGACTGTGCGAAAAGGATAAGAGCTG 119
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 134 AGTTGAGCAAAATATGGGATGCACAGCGACTATGGGACCATGCGAAAAGGATAAAAGCTG 193
Query 120 TAGTGCCAAATGCAGAGCTACGTTTGGAGATAAGGCTAATGGCTTCTGCGACCACAGTAC 179
|||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 194 TAGTGCCACATGCAGAGCTACGTTTGGAGATAGGGCTAATGGCTTCTGCGACTACAGTAC 253
Query 180 TAGTACTGGTGGTGGTGGAGAATGTATTTGCGTCTACCCTTGTCCGCCTCTGGCGCCT 237
||||||| || |||||||||||||| ||||||||||| |||||||||| ||| ||||
Sbjct 254 TAGTACTAGTCCTGGTGGAGAATGTACTTGCGTCTACCATTGTCCGCCTGTGGTGCCT 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5