BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319546
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-... 1729 0.0
> AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor
3-like 5 | chr2:8704024-8706547 REVERSE LENGTH=1867
Length=1867
Score = 1729 bits (936), Expect = 0.0
Identities = 1328/1499 (89%), Gaps = 100/1499 (7%)
Strand=Plus/Plus
Query 1 ATGCATCATTTCGTCCCTGACTTCGATACAGATGATGATTATGTCAACAACAACCATAAT 60
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 10 ATGCATCATTTTGTCCCTGACTTCGATACCGATGATGATTATGT---CAACAACC---AT 63
Query 61 AATTCATCTTTGAATCATCTTCCTAGAAAATCCATTACTACTATGGGTGAAGATGATGAT 120
||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 64 AATTCTTCTTTGAATCATCTTCCTAGAAAATCCATTACTACTATGGGTG-A-A-GATGAT 120
Query 121 GATCTTATGGAGCTTTTATGGCAGAACGGTCAAGTTGTTGTTCAAAACCAGAGACTTCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATCTTATGGAGCTTTTATGGCAGAACGGTCAAGTTGTTGTTCAAAACCAGAGACTTCAC 180
Query 181 AATAACAATACGAAGAAACCTTCTTCTTCTTCTTTTCCGACGAAGCTTCTTCAAGCTCCG 240
|| | |||||| | |||||||||| | | | | | | ||| |
Sbjct 181 ----AC----C-AAGAAA-C--CTTCTTCTTC---T-C--C--A-C--C--GAAG---C- 211
Query 241 ATTCCTCCTTCTATGGATAATCATCATCAGCAGCAGCAACCGTCGACAGATCAGAATCTT 300
||| ||||||||||| ||| | | ||||||||||| || ||||||||||||||
Sbjct 212 -TTCTTCCTTCTATGG---ATC--C-T---CAGCAGCAACCTTCTTCAGATCAGAATCTT 261
Query 301 TTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTTCGTGACGATGATTTC 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 262 TTTATTCAAGAAGATGAAATGACTTCTTGGCTTCATTATCCTCTCCGTGACGATGATTTC 321
Query 361 TGCTCCGATCTCCTCTTCTCCGCCGCACCAACT-CCTC-CCT-GTGCGACGAGTCAGGT- 416
||||| ||||| ||||||||||||||||| ||| | | || |||||| || | ||
Sbjct 322 TGCTCAGATCTTCTCTTCTCCGCCGCACCTACTGCGACGGCTACCGCGACG-GTGA-GTC 379
Query 417 -GGTCACCGCCGTAAGACCGCCAGTGCCAGTACCGTCTTCGTCGAATGAGTCGAGGCCAC 475
|||||||||| ||| || ||||||| |||||| |||||||||||||||| |
Sbjct 380 AAGTCACCGCCGCGAGA---CC---GCCAGTA---TCTTCGACGAATGAGTCGAGGCCGC 430
Query 476 CGGTGAGGAATTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTATTAACGGTAGA---G 532
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 431 CGGTGAGGAACTTCATGAATTTCTCGAGGCTGAGAGGGGATTTTAATAACGGTAGAGGTG 490
Query 533 GTGAATCTGGA------C---CAAAGACGATTGTGAGAGAATCGACTCAGGTAAGTCCTA 583
||||||||||| | | ||| || ||||||||||||| || |||||||||||||
Sbjct 491 GTGAATCTGGACCGTTGCTTTCGAAGGCGGTTGTGAGAGAATCTACGCAGGTAAGTCCTA 550
Query 584 GCGCAACACCGTCGTCAGCGGCGGCGAGTGAATCTGGTTTAACACGGGGGACGGATGGTA 643
|||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 551 GCGCAACACCGTCG---GCGGCGGCGAGTGAATCCGGTTTAACACGGCGGACGGATGGTA 607
Query 644 CTGAAAG---CTCC--A-C------CGG-AC-T-TAATCGGAAGGGAAAAGCAGTGGCTA 688
|||| || | || | | ||| | | ||||||||||||||||||||||||||
Sbjct 608 CTGACAGTTCCGCCGTAGCTGGAGGCGGCGCGTATAATCGGAAGGGAAAAGCAGTGGCTA 667
Query 689 TGACGGCGCCGGCCATTGAGATTACCGGTACATCGTCTTCTGTAGTGTCAAAGAGCGAAA 748
||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 668 TGACGGCGCCGGCGATCGAGATAACCGGTACATCGTCATCTGTAGTGTCAAAGAGCGAAA 727
Query 749 TCGAACCGGAGAAGACGAACGTTGATGACAAGAAACGAAAAGAGAGAGAAGCCACCAC-- 806
|||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 728 TCGAACCGGAGAAGACGAACGTCGATGATAGGAAACGAAAAGAGAGAGAAGCCACCACTA 787
Query 807 C-GAGGAAGCTGAGTGCCGTAGCGAGGAAACAAAACAAGCACGTGGATCAACAACATCTA 865
| || ||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 788 CTGATGAAACTGAATCCCGTAGCGAGGAAACAAAACAAGCACGTGTATCAACAACATCTA 847
Query 866 CCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGGAAACGGAGAGATAGAA 925
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 848 CCAAGAGATCTCGTGCTGCTGAAGTTCATAATCTCTCTGAAAGAAAACGGAGAGATAGGA 907
Query 926 TCAATGAGAGGATGAAAGCTTTGCAAGAACTCATACCTCGCTGCAACAAGTCGGATAAAG 985
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 908 TCAATGAGAGAATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAG 967
Query 986 CTTCGATGCTAGATGAAGCTATTGAGTACATGAAGTCTCTACAGCTTCAAATACAGGTGA 1045
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 968 CTTCGATGCTAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTTCAAATACAGATGA 1027
Query 1046 TGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGTATGCAACAGTACATGCCAC 1105
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1028 TGTCAATGGGATGTGGAATGATGCCAATGATGTATCCGGGCATGCAACAGTACATGCCTC 1087
Query 1106 ACATGGCGATGGGTATGGGTATGAACCAGCCTCTTCCTCCTCCTTCCTTTATGCCATTCC 1165
| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1088 ATATGGCGATGGGTATGGGTATGAACCAGCCTATTCCTCCTCCTTCCTTCATGCCATTCC 1147
Query 1166 CCAACATGTTAGCGGCTCAAAGACCTTTGCCAACACAAACTCAGATGGGCGGGTCAAGAC 1225
||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||| |||
Sbjct 1148 CCAACATGTTAGCCGCTCAAAGACCTTTGCCTACACAAACTCACATGGCCGGGTCAGGAC 1207
Query 1226 CGCAATACCCTGTTCATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATG 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CGCAATACCCTGTTCATGCTTCTGACCCGTCAAGAGTCTTTGTACCGAACCAGCAGTATG 1267
Query 1286 ATCCAACCTCGGGCCAGCCTCAGTATCC---TGGTTACATGGATCCATATCAGCAGTTCC 1342
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1268 ATCCAACCTCGGGCCAGCCTCAGTATCCAGCTGGTTACACGGATCCATATCAGCAGTTCC 1327
Query 1343 GCGGTCTCCACCTGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTT 1402
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 GCGGTCTCCACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTT 1387
Query 1403 CGAGCAGGGTAAGTAGTAGCAAGGAATCTGAGGATCAAGGAAACCACAAAACAGGTTAA 1461
|||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1388 CGAGCAGGGTGAGTAGTAGTAAGGAATCTGAGGATCACGGAAACCACACAACAGGTTAA 1446
Score = 171 bits (92), Expect = 2e-41
Identities = 107/114 (94%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 1349 TCC-ACCTGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTACCCAAGTTCGAGC 1407
||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1502 TCCGACCCGACCCAACCACCTCAGTTTCAGAATCAAGCAACATCGTATCCAAGTTCGAGC 1561
Query 1408 AGGGTAAGTAGTAGCAAGGAATCTGAGGATCAAGGAAACCACAAAACAGGTTAA 1461
||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 1562 AGGGTGAGTAGTAGTAAGGAATCTGAGGATCACGGAAACCACACAACAGGTTAA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5