BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319549
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20170.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1051 0.0
AT4G23390.1 | Symbols: | Protein of Unknown Function (DUF239) ... 584 6e-166
AT2G20150.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 183 2e-45
> AT2G20170.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:8701013-8704357 FORWARD LENGTH=1460
Length=1460
Score = 1051 bits (569), Expect = 0.0
Identities = 974/1164 (84%), Gaps = 50/1164 (4%)
Strand=Plus/Plus
Query 39 CGAAGAACCATACCA-TCAAAAGAGGaaaaaaaaTGAGCT-AGAGAAACTACTCAACCAT 96
|||||||| |||||| | |||| | || ||| || ||||| | |||||||||||||||||
Sbjct 70 CGAAGAACAATACCATTGAAAA-ATGAGAAACAA-GAGCTCA-AGAAACTACTCAACCAT 126
Query 97 ATTAATAAACCCGCAGTAAAAAGTTTTCAAACGAAACATGGTTACATATTGGACTGCATC 156
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 127 ATTAATAAACCCGCAATAAAAAGTTTCCAAACGAAACATGGTTATATATTGGACTGCATC 186
Query 157 GACATTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTCGATTCAGTTG 216
||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||
Sbjct 187 GACATTCAAAAGCAGCTCGCCTTTGATCATCCTTTGCTCAAAAACCATTCTATTCAGTTG 246
Query 217 AAGCCTACAATTATACCTAAATGGACAAGAGATAACAACACTTCTCAAAAATCAAGTTCT 276
||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 247 AAGCCTACAATCATACCTAAATGGACAAGAGATAA-AA-AC-ACTCAAAAATCAAGTTCT 303
Query 277 CTGCCATTTCGACAAGCTGACGACATAAGTTGTCCACTTGGAACAGTGATTATTAAAAGA 336
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 304 CTGCCATTTCGACAAGATGAAGACATAAGTTGTCCACATGGAACAGTGATTATTAAAAGA 363
Query 337 ACTACACTTGAAGATCTTATACAATTTCAACGTTTGAAATCCTTAGGG-TTCAAGTATCC 395
|||||||||||||||||||||||| ||||||||||||||| |||||| || |||||| |
Sbjct 364 ACTACACTTGAAGATCTTATACAAATTCAACGTTTGAAATATTTAGGGGTT-AAGTATAC 422
Query 396 AGCACCCCAAGACG-GGAACTGCCCCGGTATGAACCG-TCATCATTTTGCGATAGCTCAG 453
| | | ||||| ||| | || | ||||| ||| || ||||||||| |||||| |
Sbjct 423 AACTTCAAAAGACAAGGATTT-CCTCAATATGA-CCGGTCGTCATTTTGCTATAGCTGAA 480
Query 454 TACTATAAAGACAA-TGATGGAGCAAGGGGAAACATTAATATAGGGGATCCGTTTGTCAA 512
||||||| |||||| | ||||||||| ||||||||| ||| || ||||||| ||||||
Sbjct 481 TACTATAGAGACAACT-ATGGAGCAACGGGAAACATAAATTTATGGGATCCACCTGTCAA 539
Query 513 AGATGATCAACTTAGTCCAGCAAGTATATCTGTCGAGAGCGGTCTTAAAGATACGTT-AC 571
||||||| |||||| |||||||||| |||||||| |||| ||| ||| | ||| ||
Sbjct 540 CCCTGATCAATTTAGTCTTGCAAGTATATATGTCGAGAACGGTTTTAGAGACA-GTTTAC 598
Query 572 AGAGCATCTCAGCTGGATGGATAGTATCCCCAAAATTGAACCAGAATCATAGTGGCTTAT 631
||||||| ||||||||||||||||| ||||| ||| | || |||||| ||||||||||||
Sbjct 599 AGAGCATTTCAGCTGGATGGATAGTGTCCCCGAAACTAAATCAGAATAATAGTGGCTTAT 658
Query 632 TTACATATTGGTCGGTAAATGGATATAACAAAACAGGTTGCTATAGTACATTATGTCCTG 691
||||||||||| | | | ||||| || | || ||||||||||| | |||| ||||||| |
Sbjct 659 TTACATATTGGACCGCAGATGGACATGAGAAGACAGGTTGCTACAATACAGTATGTCCAG 718
Query 692 GGTTTGTTCAAGTAAGCAGCAAGTTCGCTCTTGGAGCTCGTGCC-GAACCTGTTTCCATT 750
||||||| ||||| || |||||| |||| |||||| ||| |||| || || ||||| |
Sbjct 719 GGTTTGTACAAGTGAGTAGCAAGCTCGCACTTGGAACTCTTGCCAGA-CCAACTTCCACT 777
Query 751 TATGATGGTC-AACAATA-TCAGTTAGAAGTCAGC-TT-ATTCAAGGATTATTAT-ACAG 805
|||||||| | ||||||| | | ||| ||| || | || || || |||| || || ||||
Sbjct 778 TATGATGG-CGAACAATACT-ATTTACAAGCCATCATTTAT-CA-GGATAAT-ATTACAG 832
Query 806 GAGATTGGTGGTTTGTGCTAGGCGA-CGAGCCAATTGGGTATTGGCCAAGATCATTGTTC 864
|| | ||||||||| || || || ||||||||||||||||||||||| |||||||||
Sbjct 833 GAAACTGGTGGTTTTTGATAAA-GAACGAGCCAATTGGGTATTGGCCAAAATCATTGTTT 891
Query 865 CATTTTGAAGGCTTAGCTAATGGAGCAAATCG-GATATTTTGGGGAGGAGAAGTTTTTAG 923
||| || |||| |||||| ||||||||| ||| | | |||||||||||||||||||| ||
Sbjct 892 CATGTTCAAGGTTTAGCTTATGGAGCAAGTCGTG-TGTTTTGGGGAGGAGAAGTTTTCAG 950
Query 924 TTCAGTGGAAAACATGA-TA-A-GCCCAATCATGGGAAGTGGACATTTTCCACAAGAGGG 980
| || || | | || || || | ||||| ||||||||||||||||||| ||| |||| ||
Sbjct 951 TGCACTG-AGA-CA-GAGTACAAGCCCACTCATGGGAAGTGGACATTTCCCAAAAGAAGG 1007
Query 981 CTTT-AAAAAGGCAGCTTTTGTGAATGGTCTTAAAGTGATCGATCATGTT-TC-AAAAGA 1037
||| |||||||||||||||||||| || ||||||||||| |||| || | |||| |
Sbjct 1008 -TTTCAAAAAGGCAGCTTTTGTGAACGGCCTTAAAGTGATAGATCGTGAAATAGAAAA-A 1065
Query 1038 AGTTAGGAGTCCCCCAACTTCGGG-TCTAATG-TTATTTGCAAACAGTCCAACTTGTTAT 1095
| |||| ||||| ||| || | | ||| | ||||| |||||||| |||| ||||||
Sbjct 1066 A-TTAGAAGTCCACCAG-TTAAAGATTTAA-GATTATTCGCAAACAGCCCAAAATGTTAT 1122
Query 1096 AACGTCCAAACGATATCAACGGTTGGTGAGGAGTGGTCTAGTGCAATTTTTTATGGAGGA 1155
|| ||| |||| | | || ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1123 AAAGTCGAAACAAAAACAGGGGTCGGTGAGGAGTGGTCTAGTGCAATTTTCTATGGAGGA 1182
Query 1156 CCAGGAGGATGCACAATTAGTTAA 1179
|||||||||||||| |||| ||||
Sbjct 1183 CCAGGAGGATGCACCATTACTTAA 1206
> AT4G23390.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr4:12217806-12219713 REVERSE LENGTH=1339
Length=1339
Score = 584 bits (316), Expect = 6e-166
Identities = 904/1176 (77%), Gaps = 87/1176 (7%)
Strand=Plus/Plus
Query 44 AACCATACCATCAAAAGAGGaaaaaaaaTGAGCTAG-AGAAACTACTCAACCATAT-T-A 100
||| ||||| || |||||||| ||| || ||| | | |||| ||||| ||| ||| | |
Sbjct 104 AACAATACCTTCGAAAGAGGAGAAAGAA-GAGAT-GAAGAAGCTACT-TACC-TATCTCA 159
Query 101 ATAAACCCGCAGTAAAAAGTTTTCAAAC-GAAACATGGTTACATATTGGACTGCATCGAC 159
||||||| ||||| |||||||| ||||| | |||||||||| ||||| ||||||||||||
Sbjct 160 ATAAACCTGCAGTCAAAAGTTTCCAAACTG-AACATGGTTATATATTTGACTGCATCGAC 218
Query 160 ATTCAAAAGCAGCTAGCCTTTGATCATCCTTCGCTCAAAAACCATTCGATTCAGTTGAAG 219
|||||||| |||||||| ||||||||||||| |||||| |||||||| ||| |||||||
Sbjct 219 ATTCAAAAACAGCTAGCTTTTGATCATCCTTTGCTCAAGAACCATTCTATTAAGTTGAAA 278
Query 220 CCTACAATTATACCTAAATGGA-CAAGAGATAACAACACTTCTCA-AAAATCAAGTTCTC 277
|| |||| |||||||||||||| ||| |||||||||| ||||||| |||| | |||||||
Sbjct 279 CCCACAACTATACCTAAATGGACCAA-AGATAACAACGCTTCTCATAAAA-CTAGTTCTC 336
Query 278 TGCCATTTCGACAAGCTGACGACATAAGTTGTCCACTTGGAACAGTGATTATTAAAAGAA 337
|||||||||||||| || ||||||||||||||| |||| ||||| ||| | |||||||
Sbjct 337 TGCCATTTCGACAA---GATGACATAAGTTGTCCAGTTGGGACAGTCATTGTCAAAAGAA 393
Query 338 CTACACTTGAAGATCTTATACAATTTCAACGTTTGAAATCCTTAGGGTTCAAGTATCCAG 397
|| ||||||||||||||||| | |||||||||| |||||||| | ||||| |||||||
Sbjct 394 TTATACTTGAAGATCTTATACGAGCTCAACGTTTGCAATCCTTACGATTCAACTATCCAG 453
Query 398 CACCCCAA--GACGGGAACTGCCCCG----GT-A-TGAAC-CGTCATCATTTTGCGATAG 448
| ||| | | | || | | | | | | ||| ||||||||||||| | |
Sbjct 454 GA---CAAGTGTCTGCAAAGGACAAGAAAATTGATTTAACTGGTCATCATTTTGCCACA- 509
Query 449 CTCAG-TACTATAA-A-GA-CAATGATGGAGCAAGGGGAAACATTAATATAGGGGATCCG 504
| || ||| | || | || || | ||||||||| ||||||||||| || || ||||
Sbjct 510 ATTAGTTAC-A-AAGATGACCACT-ATGGAGCAAAAGGAAACATTAACGTATGGAATCCA 566
Query 505 TTTGTCAAAGATGATCAACTTAGTCCAGCAAG-TATATCTG--TCGAGAGCGGTCTTAAA 561
||| | ||||||| |||||| || | ||| ||| || || || | |||
Sbjct 567 AACGTCTCACCTGATCAATTTAGTCTTGC-GGCTATGGCTGTATC-AG-GC-AAC--AAA 620
Query 562 -GATACGTTACAGAGCATCTCAGCTGGATGGATAGTATCCCCAAAATTGAACCAG---AA 617
||| || || ||||| || ||||||||||| || | ||| | || ||| ||
Sbjct 621 GGAT---TT-CAAAGCATTTCTGCTGGATGGATTGTGTATCCAGGGCTAAATCAGAATAA 676
Query 618 TCATAGTGGCTTATTTACATATTGGTCGGTAAATGGATATAACAAAACAGGTTGCTATAG 677
||| ||| ||| || || || ||| | | ||||| |||| || || |||||| |
Sbjct 677 TCAAAGTCACTTGTTCACTTACTGGACTGCGGATGGAAATAATAAGACTCATTGCTACAA 736
Query 678 TACATTATGTCCTGGGTTTGTTCAAGTAAGCAGCAAGT-TCGCTCTTGG-A-GCTCGTGC 734
|||| || ||||||||||||| || || |||| ||||| | || |||| | |||| ||
Sbjct 737 TACACTACGTCCTGGGTTTGTACACGTGAGCACCAAGTAT-GCAATTGGAATGCTC--GC 793
Query 735 CGAACCTGTTTCCATTTATGATGGTCAACAATATCAGTTAGAAGTCAGCTTAT-TCAAGG 793
| |||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||
Sbjct 794 CCAACCAGTTTCCATTTATGATGGTCAACAATATCAACTAGAAGTCAGCATATATCA-GG 852
Query 794 ATTAT-TATACAGGAGATTGGTGGTTTGTGCTAGGCGACGAGCCAATTGGGTATTGGCCA 852
|| || | |||| |||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 853 ATCATGT-TACAAGAGATTGGTGGTTTGTGCTAAATAACGAGCCAATTGGATACTGGCCA 911
Query 853 AGATCATTGTTC-CATTTTGAAGGCTTAGCTAATGGAGCAAAT-CGGATATTTTGGGGAG 910
| |||||||||| || | |||| |||||| ||||||| | | | | | ||||||||||
Sbjct 912 AAATCATTGTTCACACGTC-AAGGTTTAGCTGATGGAGCGAGTGCCG-TGTTTTGGGGAG 969
Query 911 GAGAAGTTTTTAGTTCAGTGGAAAACATGATA-AGCCCAATCATGGGAAGTGGACATTTT 969
||||||| | ||||||||| ||| | || | ||||||| ||||||||||||||||||
Sbjct 970 GAGAAGTGTACAGTTCAGTG-AAAG-A-GA-AGAGCCCAAGCATGGGAAGTGGACATTTC 1025
Query 970 CCACAAGAGGGCTTT-AA-AAAGGCAGCTTTTGTGAATGGTCTTAAAG-TGATCGA-TCA 1025
||||||||||| ||| || |||| |||| | |||||||||| ||||| | ||| | | |
Sbjct 1026 CCACAAGAGGG-TTTCAAGAAAG-CAGCCTATGTGAATGGT-TTAAAAATAATC-ACTGA 1081
Query 1026 TGTTTCAAAAGAAGTTAGGAGTCCCCCAACTTCGGGTCTAATGTTATTTGCAAACAGTCC 1085
| | ||||||||||| |||||| | |||| | | ||| | ||| |||| ||||||
Sbjct 1082 TATAACAAAAGAAGTTTCGAGTCCGTTAGCTTCAGCTTTAAAGACATTCGCAAGCAGTCC 1141
Query 1086 AA-CTTGTTATAACGTCCAAACGATATCAACG-GTTGGTGAGGAGTGGTCTAGTGCAATT 1143
|| || ||||||| ||||||| |||| | | |||||||| ||||| || || |||
Sbjct 1142 AAACT-GTTATAATGTCCAAAAAATATTAG-GTGTTGGTGAATTTTGGTCAAGAGCTATT 1199
Query 1144 TT-TTATGGAGGACCAGGAGGATGCACAATT-AGTT 1177
|| || ||||||||| |||||||||| | || ||||
Sbjct 1200 TTATT-TGGAGGACCTGGAGGATGCATATTTTAGTT 1234
> AT2G20150.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:8697300-8699299 FORWARD LENGTH=1284
Length=1284
Score = 183 bits (99), Expect = 2e-45
Identities = 128/142 (90%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 298 GACATAAGTTGTCCACTTGGAACA-GTGATTATTAAAAGAACTACACTTGAAGATCTTAT 356
||||||||||| |||||| || | |||||||||| ||||||||||||||||||||||||
Sbjct 3 GACATAAGTTGACCACTT-AAAAATGTGATTATTACAAGAACTACACTTGAAGATCTTAT 61
Query 357 ACAATTTCAACGTTTGAAATCCTTAGGGTTCAAGTATCCAGCACCCCAAGACGGGAACTG 416
|||| |||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||
Sbjct 62 ACAAATTCAACGTTTGAAATCTTTAGGGTTTAAGTATCCAGCATCCCAAGACGAGAACTG 121
Query 417 CCCCGGTATGAACCGTCATCAT 438
|| |||| |||||| |||||||
Sbjct 122 CCTCGGTGTGAACCATCATCAT 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5