BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319554 Length=273 Score E Sequences producing significant alignments: (Bits) Value AT2G20070.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 429 6e-120 > AT2G20070.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 81 (TAIR:AT2G25295.1); Has 10 Blast hits to 10 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:8662038-8662614 FORWARD LENGTH=460 Length=460 Score = 429 bits (232), Expect = 6e-120 Identities = 260/273 (95%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 1 ATGGCAAACAAGATGGTCGCATATCTTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60 ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAAACAATATGGTCGCATCTCCTTATAAGAATACGTTCATGATGATTGCTCTTGTT 60 Query 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGTAATAATATACGATCCGATG 120 |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| Sbjct 61 CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGGAATA-TAT--GATCCGATG 117 Query 121 TGTCCTGGAGTATGTGGAAATTTTGTTAAACCAGATTGCAATGGACTTTGCCATGGGTTA 180 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 118 TGTCCTGGAGTATGTGGAAATTTGGTTAAACCAGATTGCAATGGACTTTGCCATGAGTTA 177 Query 181 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAACAC 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 178 GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAAGAC 237 Query 241 TCTGGACCTGCTGATGTTCCAGCTACTGCTTGA 273 |||||||||| |||||||||| | ||||||||| Sbjct 238 TCTGGACCTGTTGATGTTCCACCAACTGCTTGA 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12516669501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5