BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319554

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G20070.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   429    6e-120


> AT2G20070.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: low-molecular-weight cysteine-rich 81 
(TAIR:AT2G25295.1); Has 10 Blast hits to 10 proteins in 2 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr2:8662038-8662614 FORWARD LENGTH=460
Length=460

 Score =  429 bits (232),  Expect = 6e-120
 Identities = 260/273 (95%), Gaps = 3/273 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAACAAGATGGTCGCATATCTTTATAAGAATACGTTCATGATGATTGCTCTTGTT  60
            ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCAAACAATATGGTCGCATCTCCTTATAAGAATACGTTCATGATGATTGCTCTTGTT  60

Query  61   CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGTAATAATATACGATCCGATG  120
            |||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||
Sbjct  61   CTCATCCTTTTAATTTCAGGTTCAGAAGCAAGATCGAATGGAATA-TAT--GATCCGATG  117

Query  121  TGTCCTGGAGTATGTGGAAATTTTGTTAAACCAGATTGCAATGGACTTTGCCATGGGTTA  180
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct  118  TGTCCTGGAGTATGTGGAAATTTGGTTAAACCAGATTGCAATGGACTTTGCCATGAGTTA  177

Query  181  GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAACAC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  178  GGGTTTCCTGCAGGAGGATATTGTAAACCAGGAAACACATGTTGTTGCAAAAAGAAAGAC  237

Query  241  TCTGGACCTGCTGATGTTCCAGCTACTGCTTGA  273
            |||||||||| |||||||||| | |||||||||
Sbjct  238  TCTGGACCTGTTGATGTTCCACCAACTGCTTGA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5