BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319567
Length=2682
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family p... 2200 0.0
AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family p... 1365 0.0
AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family p... 835 0.0
> AT2G19920.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8602222-8606887 REVERSE LENGTH=2784
Length=2784
Score = 2200 bits (1191), Expect = 0.0
Identities = 1501/1643 (91%), Gaps = 52/1643 (3%)
Strand=Plus/Plus
Query 20 GCGATGAAGTTTTTTCGCGGTCAGAAATCGTTCTTCTGGGTAGTGTTGAAACCATGTTGG 79
||||| ||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||
Sbjct 32 GCGATCAAGGTTTTTCGTGGTCAGAAATTGCTCTTCTGGGTAGTGTTGAAACAATGTTGG 91
Query 80 AGAAAATCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGGAAAC 139
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 92 AGAAAGTCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGGAGAC 151
Query 140 TTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATGGAGT 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 152 TTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATGCCGA 211
Query 200 ATGTGAAGACTCTCGATGGGATAATCATGTA-TTTCGTTAACAATGCGGCCACTGTTGAT 258
|||||||||| ||||||||||||||||| || |||| ||||| |||||| ||| ||||||
Sbjct 212 ATGTGAAGACCCTCGATGGGATAATCATATATTTTC-TTAACGATGCGGTCACCGTTGAT 270
Query 259 GGCTCTCCACGGCTGAGTTCCGGTGAGTCTCC-GCTTCAGTCTCCTACAACTCCTGGG-- 315
|||||||| || ||| | || || |||||||| | | |||| ||||| |||||| |||
Sbjct 271 GGCTCTCCTCGCCTGTGGTCTGGCGAGTCTCCAG-TACAGTTTCCTAGAACTCCCGGGAA 329
Query 316 ---AA-----A---------AA--AGAGGTGTCTCTTGATGGTGAAGATCCGTCTCCTAA 356
|| | || |||||||||||||||| |||||||||||||||||||
Sbjct 330 AAAAAGTTGCAGGGCTTCTCAAGCAGAGGTGTCTCTTGATCGTGAAGATCCGTCTCCTAA 389
Query 357 GTTCTTGAGAAGAGATGAAACTGGAAGAA-CTAATCACATTCCTCCGCTAGTAGCTTTGG 415
|||||||||| ||||||||| ||| |||| |||| |||||| ||| ||| |||||||||
Sbjct 390 GTTCTTGAGAGGAGATGAAAATGG-AGAATCTAAGCACATTTCTCTTCTATTAGCTTTGG 448
Query 416 GTGAACTTGAATTTAAGAAGGCGTTTCTGTTGCTTACCTATCTCGGAGGTGATCGTTTTT 475
||||||||||||| |||||||||||| ||||||||||||| || | | |
Sbjct 449 GTGAACTTGAATTCAAGAAGGCGTTTTTGTTGCTTACCTA--TC-----T--T-G----- 493
Query 476 GTTACAGGAAATCCCTGGGTGAGGTTATATCTGGTGATGAGATCAGACAATGGAAGGATT 535
| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 G--A-GGGAAATCTCTGGGTGAGGTTATATCTGGTGATGAGATCAGACAATGGAAGGATT 550
Query 536 TGCCAATGGTTGCATATGAAAGTGCAGTGTGGTTCAAGTTGGGCCAAAACGAGCAAAGAA 595
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 551 TGCCAATGGTTGCATATGAAAGAGCAGTGTGGTTCAAGTTGGGCCAAAACGAGGAAAGAA 610
Query 596 TCTC-GCTTGAATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGTTACTCCCGAT 654
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 611 T-GCAGCTTGAATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGTTGCTCCCGAT 669
Query 655 GGTAGTTACAGATTTAAGGGTTATCTACTGGAGAACACTGGAACACACCTGCACAAGGTT 714
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 670 GGTAGCTACAGATTAAAGGGTTATTTTCTGGAGAACACTGGAACACACCTGCACAAGGTT 729
Query 715 TTGGGTGATGATAATGTTTTGACCGTCAAATTTGATCAATTACCAAAGGAGTCAACCTAC 774
|||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||| |||
Sbjct 730 TTGGGTGATGATAATGTTTTAACCGTTAGATTCGATCAATTACCAAAGGAGTCAACATAC 789
Query 775 TGTAACGACCCTTACTCTAAACACAAAGGGATTGCTAAGAATGGTATCATGGTTGGTTTA 834
||| || |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 790 TGTGACAACCCTTACTCTAAATACAAAGAGATTGCTAAGAATGGTATCATGGTTGGTTTA 849
Query 835 CGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGGAAAGCAGAGAAAAAGAAGAGAAAT 894
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 850 CGTCGTTATCAATTTTTTGTCTTCAAAGATGGAGGGAAAGCAGAGAAAAAGAAGAGAAAT 909
Query 895 TCTACAAAGCAAGTGAAATGTTACTTTATACGCATGGACTCTACAGCGTCTAGTGATATG 954
|||||||||||||||||||| ||||| ||||||| || |||||||| || |||||||||
Sbjct 910 TCTACAAAGCAAGTGAAATGCTACTTCATACGCACGGGTTCTACAGCATCCAGTGATATG 969
Query 955 GAAAATCCCTATATCCTTGCCGGGATGTCTATTCATGAAGCTCGGATGCATTTTATGCAT 1014
|| ||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 970 GAGAATCCTTATATCCTTTCCGGGATGTCAATTCATGAAGCTCGTATGCATTTTATGCAT 1029
Query 1015 GTGCATACATTGCCTTCTCCGGCCAACTATATGGCACGGTTTTCTTTAATTCTGTCAAAG 1074
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1030 GTGCATACATTGCCTTCTCCCGCCAACTATATGGCAAGGTTTTCTTTAATTCTGTCAAAG 1089
Query 1075 ACAAAAAAGCTTGAAGTTGACATGACTGGGATTACCGTCAAGCAAATCGATGATATACAC 1134
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1090 ACAAAAAAGCTTGAAGTTGACATGACTGAGATTACCGTCATGCAAATCGATGATATACAC 1149
Query 1135 TGCCATGATCAAAGTAATAATGATGTTCTTGATAAGAATGGGAAACCTCGTATACACTCA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGCCATGATCAAAGTAATAATGATGTTCTTGATAAGAATGGGAAACCTCGTATACACTCA 1209
Query 1195 GATGGAACTGGATACATCTCTGAGGACCTTGCTCGGATGTGTCCAGTAAATATTTATAAA 1254
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1210 GATGGAACTGGATACATCTCTGAGGACCTTGCTCGGATGTGTCCATTAAATATTTTTAAA 1269
Query 1255 GGGAAAAAC-ATCAAAAGTGACATTATTCAGGGAAAAACCTGTGGCCAAGAGCCGCCTCT 1313
|||||| | || | |||| ||| ||||||||||| |||||| |||||||||||||||
Sbjct 1270 GGGAAAT-CTATGAGAAGTAACAATATTCAGGGAA---CCTGTGTCCAAGAGCCGCCTCT 1325
Query 1314 GCTGATCCAAATTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAATTTTTCTATTAAA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1326 GCTGATCCAAATTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAATTTTCCTATTAAA 1385
Query 1374 CAAGAACCTTCCTCCACGGACCGTCCAGGTTCGACCTTCTATGATCAAGGTGTATAAAGA 1433
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CAAGAACCTTCCTCCACAGACCGTCCAGGTTCGACCTTCTATGATCAAGGTGTATAAAGA 1445
Query 1434 TAAAAATTTGTCAAATTTTAGCACTTTTAACTCCCTGGAGGTAGTCACTACAAGTAATCC 1493
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1446 TAAAAATTTGTCAAATTTTAGCACGTTTAACTCCCTGGAGGTAGTCACTACAAGTAATCC 1505
Query 1494 ACCAAAAAGAGCGAAGCTATCGAAGAATTTGGTCGCGCTGCTGAGCTATGGAGGAGTGCC 1553
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1506 ACCAAAAAGAGCGAAGCTATCGAAGAATTTAGTCGCGCTGCTGAGCTATGGAGGAGTGCC 1565
Query 1554 AAATGAtttttttttGGATATATTGCTCAACACGTTGGAAAAGAAGAATACCGTATTCTT 1613
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1566 AAATGATTTCTTTTTGGATATATTGCTCAACACGTTGGAAAAGAAGAAAACCATATTCTT 1625
Query 1614 CAAAATACGCGCAGCGGGTAAAG 1636
|||| |||| |||||||||||||
Sbjct 1626 CAAAGTACGTGCAGCGGGTAAAG 1648
Score = 837 bits (453), Expect = 0.0
Identities = 597/661 (90%), Gaps = 32/661 (5%)
Strand=Plus/Plus
Query 1690 AGCTGCACTTCGTTA-CGGAATATGGACGATAAGAACGCTTTACAAATGATCATGGCTGG 1748
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 AGCTGCACTTCATTATGGGAATATGGACGATAAGAACGCTTTACAAATGATCATGGCTGG 1706
Query 1749 TATCCCCCTTGATGAGCCATATTTGAAGCATCATCTATCTCTTCTCTTAAAGATAAAGAA 1808
||||||||||||||||||||||||||||||| |||| ||| ||||||||| || ||||
Sbjct 1707 TATCCCCCTTGATGAGCCATATTTGAAGCATTATCTGTCTAAACTCTTAAAGTTAGAGAA 1766
Query 1809 AGATGATCTCAAAGCAGGAAGACTTCCTATTGACGAATCATACTATCTCATGGGGACAGT 1868
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1767 AGATGATCTCAAAGCAGGAAAACTTCCTATTGACGAATCATACTATCTCATGGGGACAGT 1826
Query 1869 GGATCCCACCGGAGAGCT--A--AAG--GAA-------G-AT-G--AAGTCT---G-TGT 1907
|||||||||||||||||| | ||| ||| | | | || ||| | |||
Sbjct 1827 GGATCCCACCGGAGAGCTAAAGGAAGATGAAGTCTCGGGTCTGGCCAAATCTCAGGATGT 1886
Query 1908 -C-A---T-CCTGAATCCTGGACTACATTTTGGAGACATACATATTCTACAGGCTACATA 1961
| | | | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1887 GCTAGTTTACAGGAATCCTGGACTACATTTTGGAGACATACATATTCTAAAGGCTACATA 1946
Query 1962 TGTTAAAACCTTGGAACAGTATGTCGGAAATTCCAAGTATGCTGTGTTCTTCCCTCAAAA 2021
||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1947 TGTTAAATCCTTGGAACAGTATGTTGGAAATTCCAAGTATGGTGTGTTCTTCCCTCAAAA 2006
Query 2022 AGGTCCAAGATCTTTGGGCGACGAAATTGCAGGTGGTGATTTTGATGGCGATATGTATTT 2081
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2007 AGGTCCAAGATCTTTGGGAGACGAAATTGCAGGTGGTGACTTTGATGGCGATATGTATTT 2066
Query 2082 CGTATCCAGAAATCCCAAGCTACTCGAACACTTCAAGCCAAGTCAACCGTGGGTGAGTTC 2141
| |||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||
Sbjct 2067 CATATCCAGAAATCCCAAGCTACTTGAGCACTACAAGCCAAGTGAACCGTGGGTGAGTTC 2126
Query 2142 TTCTCCACCTAGTAAAATTTACTCTGGTAGA-AAGCCAAGTGAACTTTCACCCGAACAGT 2200
|||||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 2127 TTCTCCACGTAGTAAAATTTACACTGGTAGACAA-CCAAGTGAACTTTCACCCGAACAGT 2185
Query 2201 TGGAAGAAGAGCTTTTCAACATGTTCTTAAAGACAGGATTTAGTCCCAGCA-ATGTTATA 2259
||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||
Sbjct 2186 TGGAAGAAGAGCTTTTCAAAATCTTCTTAAAGACAGGATTTAGTCCCAGCTCA-GTTATA 2244
Query 2260 GGACAGGCTGCAGATAGCTGGCTAGCAATAATGGACCGCTTCCTCACCTTAGGAGCTGAG 2319
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2245 GGACAGGCTGCAGATAGCTGGCTAGCAATAATGGACCGGTTCCTCACCTTAGGAGATGAG 2304
Query 2320 A 2320
|
Sbjct 2305 A 2305
Score = 422 bits (228), Expect = 1e-116
Identities = 311/347 (90%), Gaps = 21/347 (6%)
Strand=Plus/Plus
Query 2322 TGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTCGACGTAAAGGCCGA 2381
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2367 TGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTAGACGTAAAGGTCGA 2426
Query 2382 TGTTTTTCCACATTATATGGAGAGGAATAAAATATTCAAGTCCATTTCTATTCTTGGTTT 2441
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||
Sbjct 2427 TCTTTTTCCACATTATATGGAGAGGAATAAAACATTCAAGTCCACTTCTATTCTTGGATT 2486
Query 2442 AATCTTTGACACTGTGGATTCTCATAATGCAGAGGACCCCACACCATCCGCTCTGGGTTA 2501
|||||||||||||||||||| |||||||||||||||| |||||||||| | || |
Sbjct 2487 AATCTTTGACACTGTGGATTTTCATAATGCAGAGGACACCACACCATC---T--GG---A 2538
Query 2502 CCTTTCAGAAATCAGTAAACTCCAGTGTTTTGAAGATGAGCCGGTCTCTGAGTTTGACAT 2561
| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2539 ------A----TCAGTAAACTTCAGTGTTTTGAAGATGAGCCGGTCTCTGAGTTTGACAT 2588
Query 2562 GGAGAAATGTAAAAGCTGGCACAAGGATTACAGAAAGGAGATGTGTCAAGCGATGCACTC 2621
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2589 GGAGAAATGTAAACTCTGGCACAAGGATTACAGAAAGGAGATGTGTCAAGCGATGAACTC 2648
Query 2622 ---TGATGATGATTCCTGTGATGAAGTAATCCAGAAATACAAGAAGG 2665
|||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 2649 AGATGATGATGATTCCTGTAATGAAGTTATCCAGAAATACAAGCAGG 2695
> AT2G19910.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8595820-8600757 REVERSE LENGTH=2979
Length=2979
Score = 1365 bits (739), Expect = 0.0
Identities = 1378/1671 (82%), Gaps = 106/1671 (6%)
Strand=Plus/Plus
Query 16 GGCGGCGATGAAGTTTTTTCGCGGTCAGAAATCGTTCTTCTGGGTAGTGTTGAAACCATG 75
||| |||||||||| | | |||||||||| |||| ||||||||||||||||||||| |||
Sbjct 13 GGCTGCGATGAAGTCTCTCCGCGGTCAGAGATCGCTCTTCTGGGTAGTGTTGAAACAATG 72
Query 76 TTGGAGAAAATCTACGGGAAACACAATCATCATCCTCCGATAAAAGTGGAGACAAGACGG 135
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||
Sbjct 73 TTGGAGAAAATCTACGAGAAACACAATCATCGTCTTCCGATAAGTGTGGAGACAAGGCGA 132
Query 136 AAACTTTCTTCGATTTCTGAGGAATTGGCTTTGGAAACACTCAGGAAAGTTCTCAATATG 195
|||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 133 AAACTTTCTTCGATTTCTGAGGAATTGGCTCTGGAAACACTTAGGAAAGTTTTCAATAAG 192
Query 196 GAGTATGTGAAGACTCTCGATGGGATAATCATGTATTTCGTTAACAATG-CGGCCACTGT 254
|||| ||||||| ||||||||| ||||||||||||| ||||| | | | | ||||||
Sbjct 193 CCGTATTTGAAGACCCTCGATGGGTTAATCATGTATTTTGTTAA-AGGGACAGTCACTGT 251
Query 255 TGATGGCTCTCCACGGCTGAGTTCCGGTGAGTCTCC-GCTTCAGTCTCCTACAACTCCTG 313
||||||||||||||| |||||| |||| |||||||| | | |||||||||| ||||||||
Sbjct 252 TGATGGCTCTCCACGCCTGAGTCCCGGCGAGTCTCCAG-TACAGTCTCCTAGAACTCCTG 310
Query 314 --GGAAAAA-----A--G-------AG--GTGTCTCTTGA-TGGTGAAGA-TCCGTCTCC 353
||||| | | || ||||||||||| | | ||| | ||| |||||
Sbjct 311 CCAAAAAAAGTTGCAGGGCTTCTCAAGATGTGTCTCTTGATTTG-GAA-ACTCCCTCTCC 368
Query 354 TAAGTTCTTGAGAAGAGATGAAACTGGAAGAACTAA-TCACATTCCTCCGCTAGTAGCTT 412
||||||| ||| |||||| |||| ||| || |||| | ||||||||||||| ||||||
Sbjct 369 TAAGTTCATGAAAAGAGAAGAAAATGGTGGATCTAAGT-ACATTCCTCCGCTTTTAGCTT 427
Query 413 TGGGTGAACTTGAATTTAAGAAGGCGTTTCTGTTGCTTACCTATCTCGGAGGTG-ATCGT 471
|||||||||||||||| |||||||||||||||||||||| |||| | ||||| | |||
Sbjct 428 TGGGTGAACTTGAATTCAAGAAGGCGTTTCTGTTGCTTAGCTATATTGGAGGGGAATC-- 485
Query 472 TTTTGTTACAGGAAATCCCTGGGTGAGGTTATATCTGGTGATGAGATCAGACAATGGAAG 531
||||| | | | |||||||||||||||||| |||||||| ||||||||
Sbjct 486 CCTTGTT----G--A-------G-GAGGTTATATCTGGTGATCAGATCAGAAAATGGAAG 531
Query 532 GATTTGCCAATGGTTGCATATGAAAG-TGCAG--T-G---TGGTT----CA-AG---TTG 576
||||||||||||||| |||||| ||| || | | | |||| || | |||
Sbjct 532 GATTTGCCAATGGTTTCATATG-AAGCAGCGGTTTGGAACCGGTTGGGACAGCGTTATTG 590
Query 577 -GGCCAAAACGAGCAAAGAA-TCTCGCTTGAATCGGATAGCGGGAAGACTCATTACTATC 634
|| || |||| ||||| | | |||||| |||||| |||| ||| ||||||||||
Sbjct 591 TTCCCCCAAGGAGCGAAGAAGGC-CACTTGAAGGGGATAGTGGGATGACCCATTACTATC 649
Query 635 AATGTCATGTTACTCCCGATGGTAGTTACAGATTTAAGGGTTATCTACTGGAGAACACTG 694
||||||||||| || ||||||||||||||| ||| |||||| |||| |||||||||||||
Sbjct 650 AATGTCATGTTGCTACCGATGGTAGTTACAAATTCAAGGGTCATCTTCTGGAGAACACTG 709
Query 695 GAACACACCTGCACAAGGTTTTGGGTGATGATAATGTTTTGACCGTCAAATTTGATCAAT 754
|||||||||||||||||||||||||||||||||| ||| | || |||||||||||| ||
Sbjct 710 GAACACACCTGCACAAGGTTTTGGGTGATGATAACGTTCTAACTGTCAAATTTGATAAAG 769
Query 755 TACCAAAGGAGT--CAACCTACTGTAACGACCCTTACTCTAAACACAAAGGGATTGCTAA 812
| ||| || |||||| ||||| |||| |||||||| | ||||||||||||||||
Sbjct 770 T--GTTAGGCGTGGAAACCTATTGTAATGACCTTTACTCTACATACAAAGGGATTGCTAA 827
Query 813 GAATGGTATCATGGTTGGTTTACGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGGAA 872
|||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||
Sbjct 828 GAATGGTATCATGGTTGGGTTACGCCGTTATCGATTTTTTGTTTTCAAAGATGGAGGGAA 887
Query 873 AGCAGAGAAAAAGAAGAGAAATT-CTACAAAGCAAGTGAAATGTTACTTTATACGCATGG 931
|| |||||| ||||| ||| || |||||||| ||| ||||| ||||||||||||| |
Sbjct 888 AGAAGAGAAGAAGAA-AGATGTTTCTACAAAGGGAGTTAAATGCTACTTTATACGCACAG 946
Query 932 ACTCTACAGCGTCTAGTGATATGGAAAATCCCTATATCCTT-GCCGGGATGTCTATTCAT 990
|||| ||||| || | ||||||| |||||||||||||| || ||||| | ||| || |||
Sbjct 947 ACTCGACAGCTTCAATTGATATGCAAAATCCCTATATC-TTCGCCGGAAAGTCAATGCAT 1005
Query 991 GAAGCTCGGATGCATTTTATGCATGTGCATACATTGCCTTCTCCGGCCAACTATATGGCA 1050
||||| || |||||||||||||||||| |||| ||| | ||| | ||||||||||| ||
Sbjct 1006 GAAGCACGTATGCATTTTATGCATGTGAATACTTTGTCATCTTTGCCCAACTATATGTCA 1065
Query 1051 CGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGTTGACATGACTGGGATTACC 1110
||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 1066 AGGTTTTCTTTAATTCTGTCAAAGACTAAAACGCTCGAAGTTGACATGACTGGAATTACC 1125
Query 1111 GTCAAGCAAATCGATGATATACACTGCCATGATCAA-AGTAATAATGATGTTCTTGATAA 1169
| |||||||||||||||||||||||||||||||| | | |||| ||||||||||| ||
Sbjct 1126 TTTGAGCAAATCGATGATATACACTGCCATGATCAAGA-TGATAAGGATGTTCTTGACAA 1184
Query 1170 GAATGGGAAACCTCGTATACACTCAGATGGAACTGGATACATCTCTGAGGACCTTGCTCG 1229
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1185 GAATGGGAAACCTTGTATACATTCAGATGGAACTGGCTACATCTCTGAGGACCTTGCTCG 1244
Query 1230 GATGTGTCCAGTAAATATTTATAAAGGGAAAAAC-ATCAAAAGTGACATTATTCAG-G-- 1285
|||||||||||| ||||||| |||||||||| | || | |||| ||| ||||||| |
Sbjct 1245 GATGTGTCCAGTTAATATTTTTAAAGGGAAAT-CTATGAGAAGTAACAATATTCAGAGTA 1303
Query 1286 -GAA---AAA----------C-----C--TGTGGCCAAGAGCCGCCTCTGCTGATCCAAA 1324
||| ||| | | |||||||||||||||||||||||||||||
Sbjct 1304 AGAATTTAAATTTTGAAGGACAGGGACCATGTGGCCAAGAGCCGCCTCTGCTGATCCAGT 1363
Query 1325 TTCGGATGTTTAATGATGGCTCTGCTGTTAAGGGAATTTTTCT-ATTAAACAAGAACCTT 1383
||||||| ||| || |||||| |||||||||||||| |||||| | ||||||||| |||
Sbjct 1364 TTCGGATTTTTTATAATGGCTATGCTGTTAAGGGAACTTTTCTCAC-AAACAAGAAACTT 1422
Query 1384 CCTCCACGGACCGTCCAGGTTCGACCTTCTATGATCAAGGTGTATAAAGATAAAAATTTG 1443
||||| ||||| ||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1423 CCTCCTCGGACTGTCCAGGTTCGACCTTCTATGATCAAGGTGTATGAAGATCGAACCTTG 1482
Query 1444 TCAAATTTTAGCACTTTTAACTCCCTGGAGGTAGTCACTACAAGTAATCCACCAA-AAAG 1502
|||||| |||| || ||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1483 TCAAATCTTAGTACCTTTAACTCCTTGGAGGTAGTCACTACAAGTAATCCACCAAGAAAG 1542
Query 1503 AGCGAAGCTATCGAAGAA-TTTGGTCGCGCTGCTGAGCTATGGAGGAGTGCCAAATGAtt 1561
|||| |||||| ||||| |||||| ||||| || || ||||||||||| || ||||| |
Sbjct 1543 -GCGAGGCTATC-AAGAAATTTGGTGGCGCTACTTAGTTATGGAGGAGTCCCTAATGACT 1600
Query 1562 tttttttGGATATATTGCTCAACACGTTGGAAAAGAAGAATACCGTATTCT 1612
| |||||| ||||||||| ||||||| ||||| || || ||| ||||||
Sbjct 1601 TCTTTTTGAATATATTGCGCAACACGCTGGAAGAGTCCAAAACCATATTCT 1651
Score = 139 bits (75), Expect = 1e-31
Identities = 144/176 (82%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 2322 TGCTATTGATGCACCAAAAACGGGGACTGAGGTCAATCTCCCGTTCGA-CGTAAAGGCCG 2380
|||| ||||||||||||||| |||| || |||| |||||||| ||| | || || |
Sbjct 2400 TGCTCTTGATGCACCAAAAAAGGGGGCTAAGGTTGATCTCCCGCCCGATC-TAGAGATCA 2458
Query 2381 ATGTTTTTCCACATTATATGGAGAG-GA--ATAA-A-ATA-TTCAAGTCCATTTCTATTC 2434
| |||||||||||| |||||| | || ||| | | | |||| ||||| ||||||||
Sbjct 2459 AAAATTTTCCACATTACATGGAGCGTGACCCTAAGAGAGATTTCAGGTCCACTTCTATTC 2518
Query 2435 TTGGTTTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGA-CCCCACACCATC 2489
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 2519 TTGGATTAATCTTTGACACTGTGGATTCTCATAATGCAGAGGAACCCC-CACCATC 2573
> AT2G19930.1 | Symbols: | RNA-dependent RNA polymerase family
protein | chr2:8607340-8612441 REVERSE LENGTH=3127
Length=3127
Score = 835 bits (452), Expect = 0.0
Identities = 1056/1332 (79%), Gaps = 104/1332 (8%)
Strand=Plus/Plus
Query 320 AAGAGGTGTCTCTTGATGGTGAAGATCCGTCTCCTAAGTTC-TTGAGAAGAGATGA-AAC 377
||||| ||||| ||||| ||| | ||| ||||||||| || |||| ||| || || ||
Sbjct 308 AAGAGATGTCTGTTGATTCTGATGCTCCTTCTCCTAAG-TCTTTGAAAAGTGAAGACAA- 365
Query 378 TGGAAGAACTAAT-CACATTCCTCC-GCTAGTAGCTTTGGGTGAACTTGAATTTAAGAAG 435
||| || || | |||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 366 AGGAGGATCT-CTGCACATTCC-CCAGCTGGTAGCTTTGGGTGAACTTGAATTTAAGAAG 423
Query 436 GCGTTTCTGTTGCTTACCTATCTCGGAGGTGATCGTTTTTGTTACAGGAAATCCCTGGGT 495
| | || | ||| ||| | | | || | || || | || | || ||||
Sbjct 424 GTG-TT-T-TTG-TTA-C--T-T---AGCT-AT-ATTCCAG-GGCA--ACAT--GTGGGC 465
Query 496 GAGGTTATATCTGGTGATGAGATCAGACAATGGAAGGATTTGCCAATGGTTGCATATGAA 555
|||||||| ||| ||||||||| |||| ||||| |||||||||||||||| ||||| |
Sbjct 466 CAGGTTATAACTGCTGATGAGATTAGACTGTGGAAAGATTTGCCAATGGTTGAATATG-A 524
Query 556 AG-TGCAG--TGTG---G-TT-------CA--AGTTG-GGCCAAAACGAGCAAAGAATCT 598
|| || | || | | || || | ||| |||||| || | ||||| |
Sbjct 525 AGCAGCGGTTTGGGACCGCTTGGGCCGGCATTA-TTGTCCCCAAAAGGACCGAAGAA--T 581
Query 599 CGCTTG-AATCGGATAGCGGGAAGACTCATTACTATCAATGTCATGTTACTCCCGATGGT 657
| ||| ||| ||||||||||||||| ||||||||||| ||| ||||| ||||| |||||
Sbjct 582 -G-TTGCAATGGGATAGCGGGAAGACCCATTACTATCAGTGTAATGTTGCTCCCAATGGT 639
Query 658 AGTTACAGATTTAAGG--------G---TT--A-----TCTACTGGAGA-ACACTGGAAC 698
|| |||| ||| |||| | || | ||| || || | ||||||||||
Sbjct 640 AGCTACACATTCAAGGTTCTTTCAGCTCTTCAAGGCCCTCTTCTTGA-ACACACTGGAAC 698
Query 699 ACACCTGCACAAGGTTTTGGGTGATGATAATGTTTTGACCGTCAAATTTGATC-AAT-TA 756
|||| |||||||||| |||||||||||||||||||| ||||||||||| | | || |
Sbjct 699 ACACTTGCACAAGGTCTTGGGTGATGATAATGTTTTAACCGTCAAATTCG--CGGATGT- 755
Query 757 CC---AAAG--GAGTCAACCTACT-GTAACGACCCTTACTCTAAACACAAAGGGATTGCT 810
|| |||| | ||||| || | | | |||| ||||| || | |||||||||||||
Sbjct 756 CCAGAAAAGTTCA-TCAACATA-TAGCATTGACCATTACTTTACATACAAAGGGATTGCC 813
Query 811 AAGAATGGTATCATGGTTGGTTTACGTCGTTATCAAATTTTTGTTTTCAAAGATGGAGGG 870
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 814 AAGAACGGTATCATGATTGGTTTACGTCGTTATCAATTTTTTGTTTTCAAAGATGGA-GG 872
Query 871 AAAGCAGAGAAAAAGAAG--AGA-AATTCTACAAAGCAAGTGAAATGTTACTTTATACGC 927
||| |||| |||||||| ||| |||||||||| |||||||||| ||||||||||||
Sbjct 873 AAA--AGAGGAAAAGAAGAAAGATCTTTCTACAAAGAAAGTGAAATGCTACTTTATACGC 930
Query 928 ATGGACTCTACAGC-GTCTAGTGATATGGAAAATCCCTATATCCTT-GCCGGGATGTCTA 985
| |||||| ||||| | || ||||||| ||||||||||||| || |||| | ||| |
Sbjct 931 ACGGACTCAACAGCTTTTTA-TGATATGCAAAATCCCTATAT-TTTAACCGGAAAGTCAA 988
Query 986 TTCATGAAGCTCGGATGCATTTTATGCATGTGCATAC-ATTGCCTTCTCCGGCCAACTAT 1044
|| |||||||||| |||||||||||||| |||||| | | || || ||| || |||
Sbjct 989 TTTATGAAGCTCGTATGCATTTTATGCACGTGCAT-CGAGCACCAACTTTGGCGAATTAT 1047
Query 1045 ATGGCACGGTTTTCTTTAATTCTGTCAAAGACAAAAAAGCTTGAAGTTGACATGACTGGG 1104
|||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1048 ATGGCAAGGTTTTCCTTAATTCTGTCAAAGACTAAAACGCTTGAAGTTGACATGACTGGG 1107
Query 1105 ATTACCGTCAAGCAAATCGATGATATACACTGCCATGATCAAAG-TAATAATGATGTTCT 1163
|||||| | | ||||| |||||||||||||||||||||| ||| | || ||||||||
Sbjct 1108 ATTACCTTTGATCAAATTGATGATATACACTGCCATGATC-AAGATGGGAAAGATGTTCT 1166
Query 1164 TGATAAGAATGGGAAACCTCGTATACACTCAGATGGAACTGGATACATCTCTGAGGACCT 1223
||| ||||| |||||| | ||||| |||||||||||||| |||||||||||||||||
Sbjct 1167 TGACAAGAACAAAAAACCTTGCATACATTCAGATGGAACTGGCTACATCTCTGAGGACCT 1226
Query 1224 TGCTCGGATGTGTCCAGTAAATAT-TTATAAAGGGAAA-AACATCAAAAGTGACATTATT 1281
|||||||||||||| ||||||| || |||||||||| | ||| |||||| | ||||
Sbjct 1227 GGCTCGGATGTGTCCCCTAAATATATT-TAAAGGGAAATGTC-TCAGAAGTGAAAGTATT 1284
Query 1282 CAGGGAAAAACCTGTGGCCAAGAGCCGCCTCTGCTGATCCAAATTCGGATGTTTAATGAT 1341
|| || || | ||| |||||| |||||||| ||||||| ||||||||||| |||||
Sbjct 1285 CA-GG--AAGCATGTTACCAAGACCCGCCTCTTTTGATCCAGTTTCGGATGTTTTATGAT 1341
Query 1342 GGCTCTGCTGTTAAGGGAATTTTTCTATTAAACAAGAACCTTCCTCCACGGACCGTCCAG 1401
|| | |||||||||||||| |||||| ||||||||||| ||| ||| ||||| ||||||
Sbjct 1342 GGTTATGCTGTTAAGGGAACTTTTCTCTTAAACAAGAAACTTTGTCCTCGGACTGTCCAG 1401
Query 1402 GTTCGACCTTCTATGATCAAGGTGTATAAAGATAAAAATTTGTCAAATTTTAGCACTTTT 1461
||||||||||| ||||||||||||| ||||||| | ||||| ||||||||||| |||
Sbjct 1402 GTTCGACCTTCGATGATCAAGGTGTCTAAAGATCCATCCTTGTCCAATTTTAGCACCTTT 1461
Query 1462 AACTCCCTGGAGGTAGTCACTACAAGTAATCCACCAAAAAGAGCGAAGCTATCGAAGAAT 1521
||| || |||| ||||| || ||||||||||||||||||||| | |||||||| || |||
Sbjct 1462 AACGCCTTGGAAGTAGTAACCACAAGTAATCCACCAAAAAGAACAAAGCTATCAAAAAAT 1521
Query 1522 TTGGTCGCGCTGCTGAGCTATGGAGGAGTGCCAAATGAtttttttttGGATATATTGCTC 1581
||||| |||||||| |||||||||||| | || ||||| || ||||||||||||||||||
Sbjct 1522 TTGGTTGCGCTGCTTAGCTATGGAGGAATCCCTAATGAATTCTTTTTGGATATATTGCTC 1581
Query 1582 AACACGTTGGAA 1593
||||||||||||
Sbjct 1582 AACACGTTGGAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133193233665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5