BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319606
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19410.1 | Symbols: | U-box domain-containing protein kinas... 3421 0.0
> AT2G19410.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr2:8404901-8409012 REVERSE LENGTH=2406
Length=2406
Score = 3421 bits (1852), Expect = 0.0
Identities = 2225/2402 (93%), Gaps = 38/2402 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGTGATGTTGACGCAAGAAATGAGTGGTGGTGGTGGTCCAAAGGCAGAAGACGGC 60
|||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1 ATGGTGGTGATGCTGACGCAAGAAATGAGTGGCGGTGGTGGTCCAAAGGCGGAAGAGGGT 60
Query 61 CAGTTGTTTGTGGCGGTGGCCGTGAAGGGTTTGATCGGAGACAAATTAGGCGGCGCAGGA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAGCTGTTTGTGGCGGTGGCCGTGAAGGGTTTGATCGGAGACAAATTAGGCGGTGCAGGA 120
Query 121 AGCCGCCGTGCCGTACGGTGGGCAGTCGATAATCTTTTACCTAAGGCTGATAGGTTTGTG 180
|| || ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 121 AGTCGTCGTGCCGTACGGTGGGCTGTCGATAATCTTTTACCGAAGGCTGATAAATTTGTG 180
Query 181 ATGATCCACGTCATCCCCACCATTACTTCTATTCCTAC-CC--CCA----G-TA-AAATG 231
||||||||||||||||| |||||||||||||||||||| || | | || ||||
Sbjct 181 ATGATCCACGTCATCCCTACCATTACTTCTATTCCTACTCCGAATATTTTGATATTAATG 240
Query 232 --T-C-CG--T-T--GTTG-T--AGACGGAGAGAGATTGCCGGTGGAAGAAGTGGAGGAG 279
| | | | | |||| | || |||||| |||||||||||||||||||||||||||
Sbjct 241 TTTACGAGAATGTGGGTTGTTACAGCCGGAGATAGATTGCCGGTGGAAGAAGTGGAGGAG 300
Query 280 AGTGTGGTGGAAATGTATGTAAGAGACGTGAAAAAAGAATTTGAAACAGTCTTCGTTCCC 339
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 301 AGTGTGGTGGAAATGTATGTAAGAGACGTGAAAAAAGAATATGAAACAGTCTTTGTTCCC 360
Query 340 TTCTTGAAAATATGCAAGAGTAGTAGTAGTACCAAG-GTTGGTTT-AGT-TTTGAGAGCA 396
|| |||||||| |||||||||| ||| ||||||||| | | ||| || | |||| ||
Sbjct 361 TTTTTGAAAATGTGCAAGAGTACTAGGAGTACCAAGCGATATTTTCGGTCTAGGAGAACA 420
Query 397 AGAGGTCCAGGAGTACCATTGACTGTCTTAAAATACGCACCAGAAACATGTGAAGTATAC 456
| |||| ||||||||||| |||| || |||| ||||||||||||||||||||||||||||
Sbjct 421 AAAGGTACAGGAGTACCACTGACCGTTTTAAGATACGCACCAGAAACATGTGAAGTATAC 480
Query 457 ATTGTGTGTAAAGACAGAATCACTACAAAATCTATGGATCCATTAATCAACAGAGAGCCG 516
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 ATTGTGTGTAAAGACAGAATCACTACAAAATCTATGGATCCATTAATCAACCGAGAGCCG 540
Query 517 TGCACAAGTCCATACGCAGCCGCGACTACCCATGACTTCTTGAGAGACTGGGCGGCTAGT 576
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 541 TGCACAAGTCCACACGCAGCCGCGACTGCCCATGACTTCTTGAGAGACTGGGCGGCTAGT 600
Query 577 TTCCAGACTCTACGGTCTCCATCATTATCCGAGCCTCGACAGTCCACTGAGGCAGGCACG 636
||||| ||||||||||||||| | ||| |||| ||||||||||| ||||||||||| ||
Sbjct 601 TTCCACACTCTACGGTCTCCAACGTTACCCGATCCTCGACAGTCAACTGAGGCAGGAACA 660
Query 637 AGGAGGTCAGCATCGGCAAGAGAGCTGAGATTTGAGGCATTAAGCCTCACTTGTAATAAA 696
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 AGGAGGTCAGCATCGGCAAGAGAGCTGAGATTTGAGGCATTAAGCCTTACTTGTAATAAA 720
Query 697 CCCAAAACGCCTCAAAGTAGTAAGGCTTCTAGTGCAACAATTCCAGAGATTGTTAGGCGG 756
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 721 CCCAAAACGCCTCAAAGTAGTAAGGCTTCTAGTGCAACAACTCCAGAGATTTTTAGGCGA 780
Query 757 CATG-GCGGATCCGATATTCCGCAGCTAAATTACTCAGATTTTGTTCAAACATACACCGA 815
| | | |||||||||||||| ||||| |||||||||||||||| | |||||| ||| |
Sbjct 781 C-GGAGAGGATCCGATATTCCTCAGCTGAATTACTCAGATTTTGATAAAACATGTACC-A 838
Query 816 A-CCCCCATCGAATCTTGAGATCATCGTTAGCGAGCAGATAGACTCTGATCGTTCACCCC 874
| |||| ||| ||| |||||| |||||||||||| || ||||||||||||||||||||
Sbjct 839 AGCCCCAATCAAATGTTGAGAACATCGTTAGCGAACACCGAGACTCTGATCGTTCACCCC 898
Query 875 CGGGAACATCAAGCAAATCCAAGAAGGTTGAGATT-ATAGCAGAGGTGGAACGTTTGAAG 933
||| ||||||||| ||||||||||||||||||||| | || |||||| ||||||||||||
Sbjct 899 CGGAAACATCAAGAAAATCCAAGAAGGTTGAGATTGA-AGAAGAGGTCGAACGTTTGAAG 957
Query 934 AAGGAGCTACAAAGTACAGTCACTAAGTATAAACAAGCTTGTGAAGAGCTTTTCTCCACA 993
|| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 958 AATGAGCTACAAAGTACAGTCTTTAAATATAAACAAGCTTGTGAAGAGCTCTTCTCCACA 1017
Query 994 CAAAACAAGGTTCAAATGCTTTCGACTGAATGTTCGAACGAAGCTAAAAGAGTGAACAAT 1053
|||||||||||| |||||||||||||||||| || ||| ||| |||||||||||||||||
Sbjct 1018 CAAAACAAGGTTAAAATGCTTTCGACTGAATATTTGAATGAATCTAAAAGAGTGAACAAT 1077
Query 1054 GCCGTGGAGAAAGAAGAGTTGGAGAGGAAAACCGCGGCGCTGGAGAAAGAGCGGTACATG 1113
|| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 GCTGTGGAGAAAGAAGAGTTGCAGAGGAACACCGCGGCGCTGGAGAAAGAGCGGTACATG 1137
Query 1114 AAGGCGGTGAAAGAGGTAGAAACCGCAAAAGCATTGCTCGCAAGAGAGTTTTGTCAGCGA 1173
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1138 AAGGCGGTGAAAGAGGTCGAAACCGCGAAAGCGTTGCTCGCAAGAGAGTTTTGTCAGCGA 1197
Query 1174 CAAATAGCGGAAGTGAATGCTTTAAGGACTTACTTGGAGAAGAAGAAAGTGATCGATCAG 1233
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGATCGCGGAGGTGAATGCTTTAAGGACTTACTTGGAGAAGAAGAAAGTGATCGATCAG 1257
Query 1234 CTTTTAGGAACTGATCACCGGTATAGAAAATACACAATCGAGGATATTGTAACAGCCACA 1293
|||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1258 CTTTTAGGGACTGATCACCGGTACAGAAAATACACAATTGAGGAAATTGTAACAGCCACA 1317
Query 1294 GAAGGATTCTCGCCAGAGAAAGTGATTGGAGAAGGAGGATACGGAAAAGTATACCAATGT 1353
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1318 GAAGGATTCTCGCCAGAGAAAGTGATTGGAGAAGGAGGATACGGGAAAGTTTACCAATGT 1377
Query 1354 AGCCTTGATAGTACTCCGGCGGCTGTTAAGGTCGTCCGGCTAGATACGCCGGAGAAAAAA 1413
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 1378 AGCCTTGATAGTACTCCGGCGGCTGTTAAAGTTGTCCGGCTAGATACACCGGAGAAGAAA 1437
Query 1414 CAAGAGTTCTTGCAAGAGGTGGAGGTTCTAAGCCAACTCCGACACCCACACGTGGTTCTT 1473
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CAAGAGTTCTTGAAAGAGGTTGAGGTTCTAAGCCAACTCCGACACCCACACGTGGTTCTC 1497
Query 1474 CTCCTCGGAGCTTGTCCGGAGAATGGTTGTTTGGTTTACGAGTACTTGGAAAATGGAAGC 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CTCCTCGGAGCTTGTCCGGAGAATGGTTGTTTGGTTTACGAGTACTTGGAAAATGGAAGC 1557
Query 1534 CTCGAGGAATATATATTTCACCGGAAAAATAAACCGCCTTTGCCTTGGTTTATCCGGTTT 1593
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTCGAGGAATATATATTTCACCGAAAAAATAAACCGCCTTTGCCTTGGTTTATCCGGTTT 1617
Query 1594 AGGGTAATTTTCGAGGTGGCTTGCGGTTTAGCCTTCTTACACAGCTCTAAACCGGAACCA 1653
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1618 AGGGTAATTTTCGAGGTAGCTTGCGGTTTGGCCTTCTTACACAGCTCTAAACCGGAACCA 1677
Query 1654 ATTGTTCACCGTGATC-TCAAACCGGGAAACATCTTGTTAAACCGGAACTACGTGAGCAA 1712
|||||||||||||| | | ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1678 ATTGTTCACCGTGA-CTTAAAACCGGGAAATATCTTGTTAAACCGGAACTACGTTAGCAA 1736
Query 1713 AATTGCTGACGTTGGATTAGCCAAGCTGGTTACGGATGTTGCACCGGATAATGTCACAAT 1772
||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1737 AATCGCTGACGTTGGCCTAGCCAAGCTGGTTACGGATGTTGCACCCGATAATGTCACGAT 1796
Query 1773 GTACAAAAACTCGGTTCTTGCCGGTACATTGCATTATATTGATCCGGAATACCATC-GAA 1831
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1797 GTACCGAAACTCGGTTCTTGCCGGTACATTGCATTATATTGATCCAGAATACCA-CAGAA 1855
Query 1832 CCGGAACAATTAGACCAAAATCGGATCTTTACGCGTTCGGCATAATTATTCTTCAGCTGG 1891
||||||||||||||||||| |||||||| || |||||||||||||| ||||||||| ||
Sbjct 1856 CCGGAACAATTAGACCAAAGTCGGATCTATATGCGTTCGGCATAATCATTCTTCAGTTGT 1915
Query 1892 TGACGGCTCGTCAA-CCGAGC-GGACTTGTACCAGCGGTCGAAAACGCGGTAAAGAAAGG 1949
||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1916 TGACGGCTCGT-AACCCGAGCGGGA-TTGTACCAGCGGTCGAAAACGCGGTAAAGAAAGG 1973
Query 1950 GACGTTAACCGAAATGCTAGATAAATCGGTTACCGATTGGCCTTTGGCAGAAACCGAAGA 2009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1974 GACGTTAACCGAAATGCTAGATAAATCGGTTACCGATTGGCCTTTGGCAGAAACCGAGGA 2033
Query 2010 ATTGGCTCGGATCGGTTTAAAATGTGCAGAATTTCGATGCCGGGATAGACCGGATCTTAA 2069
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2034 ATTGGCTCGGATCGGTTTAAAATGTGCTGAATTTCGATGCCGAGATAGACCGGATCTTAA 2093
Query 2070 ATCAGAGGTTATACCGGTTTTGAAACGGCTTGTGGAGACGGCAAATTCGAAAATAAAGAA 2129
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2094 ATCAGAGGTTATACCGGTTTTGAAACGGCTTGTGGAGACGGCGAATTCGAAAGTAAAGAA 2153
Query 2130 AGAAGGAAGCAATTTACGTGCACCAAGTAATTACTTCTGTCCAATTTTACGGGAGATAAT 2189
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||
Sbjct 2154 AGAAGGAAGCAATTTACGTGCACCGAGTCATTACTTCTGTCCAATCTTACGGGAGATAAT 2213
Query 2190 GGAGGAGCCAGAGATTGCTGCTGATGGATTCACGTACGAGAGGAAAGCGATCTTAGCGTG 2249
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GGAGGAGCCAGAGATTGCTGCCGATGGATTCACGTACGAGAGGAAAGCGATCTTAGCGTG 2273
Query 2250 GCTTGAGAAACACAACATTTCACCAGTGACTCGACAAAAGCTCGACCACTTCAAGCTCAC 2309
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2274 GCTTGAGAAACATAACATTTCACCGGTGACTCGACAAAAGCTAGACCACTTCAAGCTCAC 2333
Query 2310 ACCGAACCATACACTCCGGTCTGCGATTCGCGATTGGAAATCAAGAGTCCGGTTTTCTAA 2369
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 ACCGAACCATACGCTCCGGTCTGCGATTCGCGATTGGAAATCAAGAGTCCGGTTTTCTAA 2393
Query 2370 TG 2371
||
Sbjct 2394 TG 2395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5