BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319609
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19385.1 | Symbols: | zinc ion binding | chr2:8387035-83887... 1164 0.0
> AT2G19385.1 | Symbols: | zinc ion binding | chr2:8387035-8388712
FORWARD LENGTH=1073
Length=1073
Score = 1164 bits (630), Expect = 0.0
Identities = 786/856 (92%), Gaps = 32/856 (4%)
Strand=Plus/Plus
Query 1 ATGGTTTGGTTTCAATGCGAAGACTGTGGAGAGAGTCTGAAGAAGCCAAAGCTCCCGTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 115 ATGGTTTGGTTTCAATGCGAAGACTGTGGAGAGAGTCTGAAGAAGCCAAAGGTCCCGTCT 174
Query 61 CACTTCAAGATGTGCAGAGCCAACAAGTTATCGTGCATCGATTGTGGAGAAATGTTTGGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CACTTCAAGATGTGCAGAGCCAACAAGTTATCGTGCATCGATTGTGGAGAAATGTTTGGG 234
Query 121 AAAGATACTGTGCAAGGACATACCCAGTGTATTACTGAAGCTGAGAAGTATGGTCCAAAA 180
| |||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 235 AGAGATACTGTGCAAGGACATAACCAATGCATTACTGAAGCTGAGAAGTATGGTCCAAAA 294
Query 181 GGGCAGTCAAAGTCATCTAATGGCACACCTGCAAAGCCAAAGGATAACTCTAAGCAACAG 240
||||||||||||||| ||||||| |||||||||||||||||||| | |||||||||| ||
Sbjct 295 GGGCAGTCAAAGTCAGCTAATGGAACACCTGCAAAGCCAAAGGACATCTCTAAGCAAGAG 354
Query 241 CCTGACTTCGATATTACTGTCGGCTTATCGAACCGATATCCATGGTTTTGTAGTATATGT 300
|||||||| ||||||| |||||||||||| |||||||||||||||||||| ||| |||||
Sbjct 355 CCTGACTTTGATATTAATGTCGGCTTATCAAACCGATATCCATGGTTTTGCAGTTTATGT 414
Query 301 TACACAAAGGCTACTAGCCAGCAGACTCTGCTTGCGCATGCGGATGGGAAGAAGCACCGA 360
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 415 AACACAAAGGCTACTAGCCAGCAGACTTTGCTTGCCCATGCGGATGGGAAGAAGCACCGA 474
Query 361 GGAAAAGCAAAAGCCTTCCATGCTAGACAACAGCAACAGTCTGAA-CCATCCG-CGGTGG 418
|||||||| ||||||||||||||||| ||||| ||| | | || ||| | | | |||
Sbjct 475 GGAAAAGCTAAAGCCTTCCATGCTAGGCAACAACAAGAA-C--AATCCA-C-GACTTTGG 529
Query 419 ATA-CGAAGGATGGAAGCGAAAACGCGTCTAATGGTGATTCAGAACAGAAGAAAGTAGAT 477
||| | ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 530 ATAAC-AAGGATGGAAGTGAAAATGCGTCTAATGTTGATTCAGAACAGAAGAAAGTAGAT 588
Query 478 TTACCTGTCTCCTCAAGTGTTGCGAATGGAGAATCGCATGCC-GAGAAAAAGAGAAAGCT 536
||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 589 TTACCTGCCTCCTCAGGTGTTGCGAATGGAGAATCGCAT-CCTGAGAAAAAGAGAAAGCT 647
Query 537 AGAGACTTTGGATGAAACGAGTAAAGGTGAGGTACCTCAAGCCGAAGAAGCAAAAGGAAG 596
|||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct 648 AGAGACTTTGGATGAAACGAGTGAAGG-------C-----G---AAGAAGCAAAAGGAAG 692
Query 597 TGATCTAAAGAAAGCTAAGAAGCAGGACCATGAGAAGAAAATCAATTGGAAGAAGTTGAT 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGATCTAAAGAAAGCAAAGAAGCAGGACCATGAGAAGAAAATCAATTGGAAGAAGTTGAT 752
Query 657 CACATCGGCTTTGAAGTCTAACGAAGATAAAACTTTGAAGATGAAGAAACTGAAGAAGCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CACATCGGCTTTGAAGTCTAACGAAGATAAAACTTTGAAGATGAAGAAACTGAAGAAGCT 812
Query 717 TGTTCTGGAATCTATTGTGGATTCAGGCATAACTCGAGACAAATCTGAGCTTAAGGCAGA 776
||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 813 CGTTCTGGAATCTATTGTGGATTCAGGC----C--GAGACAAATCTGAGCTTAAGGCAGA 866
Query 777 GCTAGTGCTAAAGGTGAATTCAAGCTCCAGATTCACGGTTGATGGGAAGTATGTGAAACT 836
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 867 GCTAGAACTAAAGGTGAATTTGAGCTCCAGATTCACAGTTGATGGGAAGTATGTGAAACT 926
Query 837 TGTGGCTAAAGATTGA 852
||||||||||||||||
Sbjct 927 TGTGGCTAAAGATTGA 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5