BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319616
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mitotic c... 1664 0.0
> AT2G19270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Mitotic
checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has
930 Blast hits to 533 proteins in 146 species: Archae - 0;
Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses
- 0; Other Eukaryotes - 381 (source: NCBI BLink). | chr2:8360189-8361924
REVERSE LENGTH=1257
Length=1257
Score = 1664 bits (901), Expect = 0.0
Identities = 1034/1094 (95%), Gaps = 25/1094 (2%)
Strand=Plus/Plus
Query 1 ATGGACTCTCTGGTCGCGAGTTACGCGTCGTCGGACGAAGAAGAAGATCTTCAACCACGT 60
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 18 ATGGACTCTCTGGTAGCGAGCTACGCTTCGTCGGACGAAGAAGAAGATCTTCAACCACGT 77
Query 61 AGAGAAGCTTTCACTGTGAAATCCTCAGAACCTAGAACTTCTTCTTCGTCTCTGTTCTCA 120
|||||||||||||||| |||||||||||| | |||| |||||||||| ||||||
Sbjct 78 CGAGAAGCTTTCACTGTAAAATCCTCAGAA-C-----CTTCCGCTTCGTCTCTATTCTCA 131
Query 121 GCTATTCCTCAACCCAAAGTACTCAAATCCTCCGAAGATGGTGATTTTGGTTCAtcttcc 180
|||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||||
Sbjct 132 GCTATTCCTCAACCTAAAGAACTCAAATCCTCCGAAGATGGTGATTTAGGCTCATCTTCC 191
Query 181 tctcgaggaaaatcttctccgttcctctcctctctccctcctcccaaatcctcAATTTCA 240
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 192 TCTCGAGGAAAATCTTCTTCTTTCCTCTCATCTCTCCCTCCTCCCAAATCCTCAATTTCA 251
Query 241 CGGAAACAAAATCCGGC-A-CCGTCGTCAATTCCGAAACGTGTCGTCCAGATCAGGCTTC 298
|||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGGAAAAAAAATCC--CAATCCGTCGTCAATTCCGAAACGTGTCGTCCAGATCAGGCTTC 309
Query 299 CCGTAAACCCTAGACCGAGCAATCTTGATGATgaagaagacgacgaagaagaagagaaag 358
| |||||||||||||||||||||| | ||| || |||||||||||||||||||||||||
Sbjct 310 CAGTAAACCCTAGACCGAGCAATC-T--TGACGACGAAGACGACGAAGAAGAAGAGAAAG 366
Query 359 ctaggaagaagCGTAAACAGATGGAATCTGCTTCCGCATCTCACGATTCATCAGTGAGAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 367 CTAGGAAGAAGCGTAAACAGATGGAATCTGCTTCCGCATCTCACGATTCATCAGTAAGAT 426
Query 419 CGTTCTTATCCGCCATGCCTGCACCTAAAAGCTCGCAAACATTAGGTGCTCTTCCTTCAT 478
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 427 CGTTCTTATCCGCCATGCCTGCACCTAAAAGCTCACAAACACTAGGTGCTCTTCCTTCAT 486
Query 479 TGGGATCAGGATCAGGTCGAAGATCGAATCTCGAAACGGAAACA-CTTGCAATTGTAATT 537
||||||||||||||||||||||||||||||||||||| |||||| ||| |||||| | ||
Sbjct 487 TGGGATCAGGATCAGGTCGAAGATCGAATCTCGAAACAGAAACACCTT-CAATTGCATTT 545
Query 538 CCTCAAACGGATTCAGGTATTAGTGATCAACAAAACCAGAGCTATGAATCGTTTAGTCAT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CCTCAAACGGATTCAGGTATTAGTGATCAACAAAACCAGAGCTATGAATCGTTTAGTCAT 605
Query 598 AGTAATAGCGAAACGGAACAAAAT-GTTGGAGTAGATAACTATTATGCTGCTGGTTATG- 655
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 606 AGTAATAGCGAAACGGAACAAA-TCGTTGGAGTAGATAACTATTATGCTACTGGTTATGA 664
Query 656 -G-TGGATACGAAACGAAT-CCTAGTGGTAGT-GTG-GG-ATATGATGGTAGTAGCTATG 709
| |||||||||||| ||| |||||||||||| ||| || ||||||||||||||||||||
Sbjct 665 TGGTGGATACGAAAC-AATTCCTAGTGGTAGTAGTGTGGGATATGATGGTAGTAGCTATG 723
Query 710 GAGGTAATACTTGGAATGGTGGTGGGTTTGAGGCAACAACGGGATTGCCCGAAGCGGTTG 769
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 724 GAGGTAATACTTGGAATGGTGGTGGGTTTGAGGCAATGACGGGATTGCCTGAAGCGGTTG 783
Query 770 TAGCTATGGATAGTGGTGCGAGGAGAGGAAGGAGAGGGAGGAACCAGATGCCAGAGATTG 829
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 784 TAGCTATGGATAGTGGTGCGAGGAGAGGAAGGAGAGGGAGGAATCAGATGCCAGAGATTG 843
Query 830 TTGAGGTTAAGCAAGATGAGCTTATGAAGAATAGGCCAAGAGTTGATCAGGTTAAATCTA 889
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 844 TTGAGGTTAAGCAAGATGAGCTTATGAAGAATAGGCCACGAGTTGATCAGGTTAAATCTA 903
Query 890 CTGGAATCGCCTTTGGACCTGCGTATCAGCCGGCAACATCTTCATCTAAAGGGAAAGTGT 949
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 904 CTGGAATCGCCTTTGGACCTGCGTATCAGCCGGTAACATCTTCATCTAAAGGGAAAGTGT 963
Query 950 CAAAGCTTCACAAGAGGAAGCATCAAATCACTGCGTTATTCATGGACATGAAGCACAAGG 1009
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 964 CAAAGCTTCACAAGAGGAAGCATCAAATCACTGCGTTGTTCATGGACATGAAGCACAAGG 1023
Query 1010 AGTCGGAGTTGACAGAGAGACGTTCTAGAGGATTGCTCACAAAAGCCGAGACACAAGCTA 1069
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1024 AGTCGGAGTTGACAGAGAGACGTTCTAGAGGATTGCTCACGAAAGCCGAGACACAAGCTA 1083
Query 1070 AATATGGATGGTGA 1083
|||| |||||||||
Sbjct 1084 AATACGGATGGTGA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5