BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319654
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT1G40091.1 | Symbols: | transposable element gene | chr1:1500... 357 3e-98
> AT1G40091.1 | Symbols: | transposable element gene | chr1:15005207-15008662
REVERSE LENGTH=3456
Length=3456
Score = 357 bits (193), Expect = 3e-98
Identities = 219/232 (94%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 1 ATGTATCTGAATGATATAGAGACACGATTTAATCGTTATGGCCGCGTTGATGATCGACCT 60
||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||
Sbjct 2579 ATGTATCTGAATGATATAGAGACACGATTCACTCGGTATGGCCGCATTGATGATCGACCT 2638
Query 61 CTAGCTCAGACCAGTATAAGACCAAATTCAGAACTTCCATTTATTTTTCCAAACCTTGGA 120
||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2639 CTAGCTCAGACAAGTATAAGACCAAATTCAGAACTTCCATTAATTTTTCTAAACCTTGGA 2698
Query 121 AGATTTGTTGGAGCGGGTCAGGTTTATACTCTTAATCATGTAGAGAGGCAACAAGCACAT 180
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 AGATTTGTTGGAGGGGGTAAGGTTTATACTCTTAATCATGTAGAGAGGCAACAAGCACAT 2758
Query 181 CGACATATATTGGTCAATTGTCAACTACTTGATCCCTTACGAGAGTACGTTT 232
|| |||||||||||||| |||||||||||||||| |||| ||||||||||||
Sbjct 2759 CGGCATATATTGGTCAACTGTCAACTACTTGATCACTTAAGAGAGTACGTTT 2810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5