BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319672 Length=2172 Score E Sequences producing significant alignments: (Bits) Value AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2976 0.0 > AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:7485398-7487602 REVERSE LENGTH=2148 Length=2148 Score = 2976 bits (1611), Expect = 0.0 Identities = 2000/2183 (92%), Gaps = 46/2183 (2%) Strand=Plus/Plus Query 1 ATGGGATCACACCTGTATTCAAAGCTACAAGCTTTGTCTTCAAAGATTAAGCAAGCTTCT 60 |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGGATCACACTTGTGTTCAAAGCTACAAGCTTTGTCTTCGAAGATTAAGCAAGCTTCT 60 Query 61 GTTAATGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGTGCTGGAATT 120 |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 61 GTTAGTGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGAGCTGGAGTT 120 Query 121 CAATTTAACGATCCTTTTGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAGCTCTCATGG 180 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | | Sbjct 121 CAATTTAACGATCCTTTCGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAG----C-T-- 173 Query 181 CTGTTGCAAGGTTTTGAGTCTTATGTTTCTGTGGGGAATTCGATTGCTGATTTCTATATG 240 | | | | || | | |||||| ||||| || |||||||||||||||||| Sbjct 174 C---T-C-A-----TG-G-C---TGTTTC--AAGGGAACTCAATTGCTGATTTCTATATG 216 Query 241 AAATGTGGAGACTTGTGTTCTGGGTTACGAGCATTTGATTGTATGAATTCGAGAGATTCG 300 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 217 AAATGTGGAGACTTGTGTTCTGGGTTACGAGAATTTGATTGTATGAATTCGAGAGATTCG 276 Query 301 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATCATGGTTTTGAAGAAGAAGGGTTA 360 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 277 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATTATGGTTTTGAAGAAGAAGGGTTA 336 Query 361 TGGTGGTTTTCGAAGTTAAGAGTTTGGGGTTTTGAGCCTAATGTTTCAACATTGGTTCTT 420 ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 337 TGGTGGTTTTCGAAGTTGAGAGTTTGGGGTTTTGAGCCTAATACTTCAACATTGGTTCTT 396 Query 421 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGTTC 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 397 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGATC 456 Query 481 CGTAGTGGGTTTTG-GAGGATTTCGTCTGTTCAAAATTCGATCTTGTGTCTGTATTCAGA 539 |||||||||||||| | |||||||||||||||||||||||||||||||| |||| |||| Sbjct 457 CGTAGTGGGTTTTGTG-GGATTTCGTCTGTTCAAAATTCGATCTTGTGTATGTACGCAGA 515 Query 540 GTT-TGATTCTTTAAGTGCACGTAAACTGTTTGATGAAATGTCTGAAAGAGATGTTATTT 598 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 516 -TAGTGATTCTTTAAGTGCACGTAAACTGTTCGATGAAATGTCTGAAAGAGATGTTATTT 574 Query 599 CATGGAGTGTTGTTATCAGAAGTTATGTGCAGAGCCAGGAACCTGTT-TTGGGATTGGAG 657 | ||||||||||| ||| ||||||||||||||||| ||||||||||| |||| |||| || Sbjct 575 CTTGGAGTGTTGTAATCCGAAGTTATGTGCAGAGCAAGGAACCTGTTGTTGG-ATTGAAG 633 Query 658 TTGTTTAAAGAGATGGTTCGTGAGGCGAAAACAGAGCCTGATTGTGTAACTGTGACAAGT 717 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 634 TTGTTTAAAGAGATGGTTCATGAGGCGAAAACAGAGCCTGATTGTGTGACTGTGACAAGT 693 Query 718 GTTTTAAAGGCTTGTGCGGTTTTGGATGACATTGATGTGGGAAGATCAGTTCATGGGTTT 777 ||| | |||||||| |||| |||| ||||||||||| ||||||||||||||||||||| Sbjct 694 GTTCTCAAGGCTTGCACGGTGATGGAGGACATTGATGTTGGAAGATCAGTTCATGGGTTT 753 Query 778 TCGATACGGAGAGGTTTTGATTTGGTAGATGTGTTTGTGCGCAATTCACTCATTGATATG 837 ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| Sbjct 754 TCGATACGGAGAGGTTTTGATTTGGCAGATGTGTTTGTTTGCAATTCACTTATTGATATG 813 Query 838 TATTCAAAAGGATATGATGCTGATTCAGCATTTAGAGTATTTGATGAGACGACTTGTCGA 897 ||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 814 TATTCAAAAGGATTTGATGTTGATTCAGCATTTAGAGTATTTGATGAGACCACTTGTCGA 873 Query 898 AACATTGTTTCATGGAATTCGATTTTGGCTGGATTTGTATATAACCAAAGGTACGATGAG 957 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| Sbjct 874 AACATTGTTTCATGGAATTCGATTTTGGCTGGGTTTGTACATAATCAAAGGTACGATGAG 933 Query 958 GCTCTTGAGATGTTTCGTTTGATGA-GAAAAGAGGCTGTTGAAGCGGATGAAGTTACACT 1016 |||||||||||||||| ||||||| | || ||||| || |||| ||||||||||||| | Sbjct 934 GCTCTTGAGATGTTTCATTTGATGGTGCAA-GAGGCGGTCGAAGTGGATGAAGTTACAGT 992 Query 1017 CGTGAGTCTTCTTCAGGTTTGCAAGTTTTTTGAGCATCCATTGCCCTGCAAGTCAATACA 1076 |||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 993 CGTGAGTCTTCTCCGGGTTTGCAAGTTTTTTGAGCAGCCATTGCCTTGCAAGTCAATACA 1052 Query 1077 TGGTGTAATAATCCGGCGTGGATATGAGTCAAACGAAGTGGCGTTGAGTTCTTTGATGGA 1136 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 1053 TGGTGTAATAATTCGGCGTGGATATGAGTCAAACGAAGTGGCTTTGAGTTCTTTGATTGA 1112 Query 1137 TGCATATACAAGTTGCAGTCTTGTTGATGACGCAAGAACCGTGTTTGATTCGATGTCATA 1196 ||| |||||||| ||||||||||||||||| ||| |||||||| ||||||||||| | || Sbjct 1113 TGCGTATACAAGCTGCAGTCTTGTTGATGATGCAGGAACCGTGCTTGATTCGATGACGTA 1172 Query 1197 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCGTTCTGGCCGATCTGA 1256 |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || Sbjct 1173 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCATGCTGGCCGATCCGA 1232 Query 1257 TGAAGCAATCTCAATCTTCTGTCAGATGAGGGATAAGCCCAACGCAATCACCGTCATAAG 1316 |||||||||||||||||||||||| |||||||||| |||||| || |||||||||||||| Sbjct 1233 TGAAGCAATCTCAATCTTCTGTCACATGAGGGATACGCCCAATGCTATCACCGTCATAAG 1292 Query 1317 TCTACTTAGCGCATGCTCAGTTTCAGCAGTCTTGAGAACTTCCAAATGGGCACATGGAAT 1376 ||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||| || Sbjct 1293 TCTTCTTAACGCATGCTCAGTTTCAGCGGACTTGAGAACTTCCAAATGGGCACATGGGAT 1352 Query 1377 TGCTATCCGGAGAGGCTTAGCCATCAATGATATCTCAGTTGATACCTCTATTGTTGACGC 1436 ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 1353 TGCTATCCGGAGAAGCTTAGCCATCAATGACATCTCAGTTGGTACCTCTATTGTTGACGC 1412 Query 1437 AAACGCCAAATGTGGTGCCATAGATATTGCGAGAAGGACATTCGATCAAATCACTGAGAA 1496 | |||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 1413 ATACGCAAAATGTGGTGCCATAGAAATGGCGAGAAGGACTTTCGATCAAATCACTGAGAA 1472 Query 1497 AAGCATCGTCTCTTGGACCGTGATCATTTCAGCATACGCGATTAACGGTTTACCGGATAA 1556 || |||| |||||||||||||||||||||||||||| || ||||| ||| |||||||||| Sbjct 1473 AAACATCATCTCTTGGACCGTGATCATTTCAGCATATGCTATTAATGGTCTACCGGATAA 1532 Query 1557 AGCATTAGCATCGTTCGATGAAATGAAACGAGATAG-TTACACACCAAACGCTGTGACAT 1615 ||||||||||| ||||||||||||||||| | | || ||||||||||||||||||||||| Sbjct 1533 AGCATTAGCATTGTTCGATGAAATGAAACAAAA-AGGTTACACACCAAACGCTGTGACAT 1591 Query 1616 ACCTTGCAGCTTTATCAGCTTGCAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1675 | || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1592 ATCTGGCAGCTTTATCAGCTTGTAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1651 Query 1676 TCAGATCAATGGTAGAAGAAGATCAAAAACCTTCGTTACAGCATTACTCTTGCATTGTAG 1735 ||| ||||||||||||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 1652 TCAAATCAATGGTAGAAGAAGATCACAAACCTTCATTGCAACATTACTCTTGCATTGTAG 1711 Query 1736 ACATGCTTAGCCGAGCAGGAGAGATTGATACCGCAATGGAACTAATCAAGAACCTTCCAG 1795 |||||||||||||||| |||||||||||||| || ||||||| |||||||| ||||||| Sbjct 1712 ACATGCTTAGCCGAGCTGGAGAGATTGATACGGCTGTGGAACTTATCAAGAATCTTCCAG 1771 Query 1796 AAGACGTTAAAGCCGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGTAGAAACCGTT 1855 |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1772 AAGATGTTAAAGCAGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGCAGAAACCGTT 1831 Query 1856 T-AAAAAGTGGGATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCATTG 1914 | ||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1832 TTAAAAAATTG-ATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCCTTG 1890 Query 1915 TGTTCTTCAGGGTATTTGCTTGCGTCAAGCGTC-TTCGCTGCAGAGAAATCATGGGTCGA 1973 ||||||||||| || ||||||||||||||| | || |||||||| |||||||||| || Sbjct 1891 TGTTCTTCAGGTTACTTGCTTGCGTCAAGCA-CATTTGCTGCAGAAAAATCATGGGAAGA 1949 Query 1974 TGTAGCGATGATGAGAAGTTTGGTGAAGGAGAGAAAGGTTCGAGTCGTTGCGGGTTATAG 2033 |||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1950 TGTAGCAATGATGAGGAGGTTGGTGAAGGAGAGAAAGGTTCGGGTCGTTGCGGGTTATAG 2009 Query 2034 CATGGTTCTTGAAGGAAGCATTG-CTAGAA-AG-TTTTTGGCTGGAGACAAGTTAAACCA 2090 |||||||| |||||||| | ||| | | || || |||||||||||||||||||||| ||| Sbjct 2010 CATGGTTCGTGAAGGAAAC-TTGGC-A-AAGAGGTTTTTGGCTGGAGACAAGTTAAGCCA 2066 Query 2091 CAGTGATTCTGAGTTAAACGATGTCGTTCAGAGTCTTCACAGATGCATGAGGTTAGACGA 2150 ||||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||| Sbjct 2067 GAGTGATTCTGAATTAAATGATGTCGTTCAGAGTCTTCATAGATGCATGAAGTTAGACGA 2126 Query 2151 TA-TGGTAGGACCGATAAACTAA 2172 || || |||||||||||||||| Sbjct 2127 TACTGC-AGGACCGATAAACTAA 2148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107730369570 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5