BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319672
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2976 0.0
> AT2G17210.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:7485398-7487602 REVERSE LENGTH=2148
Length=2148
Score = 2976 bits (1611), Expect = 0.0
Identities = 2000/2183 (92%), Gaps = 46/2183 (2%)
Strand=Plus/Plus
Query 1 ATGGGATCACACCTGTATTCAAAGCTACAAGCTTTGTCTTCAAAGATTAAGCAAGCTTCT 60
|||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGGATCACACTTGTGTTCAAAGCTACAAGCTTTGTCTTCGAAGATTAAGCAAGCTTCT 60
Query 61 GTTAATGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGTGCTGGAATT 120
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 61 GTTAGTGGAAAATGGCGGGAAGTGGTCTCTGGGTATTCAGAGATACAGAGAGCTGGAGTT 120
Query 121 CAATTTAACGATCCTTTTGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAGCTCTCATGG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 121 CAATTTAACGATCCTTTCGTTTTCCCCATTGTTTTTAAAGCTTGTGCTAAG----C-T-- 173
Query 181 CTGTTGCAAGGTTTTGAGTCTTATGTTTCTGTGGGGAATTCGATTGCTGATTTCTATATG 240
| | | | || | | |||||| ||||| || ||||||||||||||||||
Sbjct 174 C---T-C-A-----TG-G-C---TGTTTC--AAGGGAACTCAATTGCTGATTTCTATATG 216
Query 241 AAATGTGGAGACTTGTGTTCTGGGTTACGAGCATTTGATTGTATGAATTCGAGAGATTCG 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 217 AAATGTGGAGACTTGTGTTCTGGGTTACGAGAATTTGATTGTATGAATTCGAGAGATTCG 276
Query 301 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATCATGGTTTTGAAGAAGAAGGGTTA 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 277 GTGTCTTGGAATGTTATCGTTTTTGGGCTTCTCGATTATGGTTTTGAAGAAGAAGGGTTA 336
Query 361 TGGTGGTTTTCGAAGTTAAGAGTTTGGGGTTTTGAGCCTAATGTTTCAACATTGGTTCTT 420
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 337 TGGTGGTTTTCGAAGTTGAGAGTTTGGGGTTTTGAGCCTAATACTTCAACATTGGTTCTT 396
Query 421 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGTTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 397 GTGATTCATGCGTGTCGTAGTTTATGGTTCGATGGAGAGAAGATTCATGGCTATGTGATC 456
Query 481 CGTAGTGGGTTTTG-GAGGATTTCGTCTGTTCAAAATTCGATCTTGTGTCTGTATTCAGA 539
|||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 457 CGTAGTGGGTTTTGTG-GGATTTCGTCTGTTCAAAATTCGATCTTGTGTATGTACGCAGA 515
Query 540 GTT-TGATTCTTTAAGTGCACGTAAACTGTTTGATGAAATGTCTGAAAGAGATGTTATTT 598
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 516 -TAGTGATTCTTTAAGTGCACGTAAACTGTTCGATGAAATGTCTGAAAGAGATGTTATTT 574
Query 599 CATGGAGTGTTGTTATCAGAAGTTATGTGCAGAGCCAGGAACCTGTT-TTGGGATTGGAG 657
| ||||||||||| ||| ||||||||||||||||| ||||||||||| |||| |||| ||
Sbjct 575 CTTGGAGTGTTGTAATCCGAAGTTATGTGCAGAGCAAGGAACCTGTTGTTGG-ATTGAAG 633
Query 658 TTGTTTAAAGAGATGGTTCGTGAGGCGAAAACAGAGCCTGATTGTGTAACTGTGACAAGT 717
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 634 TTGTTTAAAGAGATGGTTCATGAGGCGAAAACAGAGCCTGATTGTGTGACTGTGACAAGT 693
Query 718 GTTTTAAAGGCTTGTGCGGTTTTGGATGACATTGATGTGGGAAGATCAGTTCATGGGTTT 777
||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 694 GTTCTCAAGGCTTGCACGGTGATGGAGGACATTGATGTTGGAAGATCAGTTCATGGGTTT 753
Query 778 TCGATACGGAGAGGTTTTGATTTGGTAGATGTGTTTGTGCGCAATTCACTCATTGATATG 837
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||
Sbjct 754 TCGATACGGAGAGGTTTTGATTTGGCAGATGTGTTTGTTTGCAATTCACTTATTGATATG 813
Query 838 TATTCAAAAGGATATGATGCTGATTCAGCATTTAGAGTATTTGATGAGACGACTTGTCGA 897
||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 814 TATTCAAAAGGATTTGATGTTGATTCAGCATTTAGAGTATTTGATGAGACCACTTGTCGA 873
Query 898 AACATTGTTTCATGGAATTCGATTTTGGCTGGATTTGTATATAACCAAAGGTACGATGAG 957
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 874 AACATTGTTTCATGGAATTCGATTTTGGCTGGGTTTGTACATAATCAAAGGTACGATGAG 933
Query 958 GCTCTTGAGATGTTTCGTTTGATGA-GAAAAGAGGCTGTTGAAGCGGATGAAGTTACACT 1016
|||||||||||||||| ||||||| | || ||||| || |||| ||||||||||||| |
Sbjct 934 GCTCTTGAGATGTTTCATTTGATGGTGCAA-GAGGCGGTCGAAGTGGATGAAGTTACAGT 992
Query 1017 CGTGAGTCTTCTTCAGGTTTGCAAGTTTTTTGAGCATCCATTGCCCTGCAAGTCAATACA 1076
|||||||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 993 CGTGAGTCTTCTCCGGGTTTGCAAGTTTTTTGAGCAGCCATTGCCTTGCAAGTCAATACA 1052
Query 1077 TGGTGTAATAATCCGGCGTGGATATGAGTCAAACGAAGTGGCGTTGAGTTCTTTGATGGA 1136
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1053 TGGTGTAATAATTCGGCGTGGATATGAGTCAAACGAAGTGGCTTTGAGTTCTTTGATTGA 1112
Query 1137 TGCATATACAAGTTGCAGTCTTGTTGATGACGCAAGAACCGTGTTTGATTCGATGTCATA 1196
||| |||||||| ||||||||||||||||| ||| |||||||| ||||||||||| | ||
Sbjct 1113 TGCGTATACAAGCTGCAGTCTTGTTGATGATGCAGGAACCGTGCTTGATTCGATGACGTA 1172
Query 1197 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCGTTCTGGCCGATCTGA 1256
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||
Sbjct 1173 CAAGGATGTGGTGTCATGTAGCACAATGATCTCTGGATTAGCCCATGCTGGCCGATCCGA 1232
Query 1257 TGAAGCAATCTCAATCTTCTGTCAGATGAGGGATAAGCCCAACGCAATCACCGTCATAAG 1316
|||||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||
Sbjct 1233 TGAAGCAATCTCAATCTTCTGTCACATGAGGGATACGCCCAATGCTATCACCGTCATAAG 1292
Query 1317 TCTACTTAGCGCATGCTCAGTTTCAGCAGTCTTGAGAACTTCCAAATGGGCACATGGAAT 1376
||| |||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 1293 TCTTCTTAACGCATGCTCAGTTTCAGCGGACTTGAGAACTTCCAAATGGGCACATGGGAT 1352
Query 1377 TGCTATCCGGAGAGGCTTAGCCATCAATGATATCTCAGTTGATACCTCTATTGTTGACGC 1436
||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1353 TGCTATCCGGAGAAGCTTAGCCATCAATGACATCTCAGTTGGTACCTCTATTGTTGACGC 1412
Query 1437 AAACGCCAAATGTGGTGCCATAGATATTGCGAGAAGGACATTCGATCAAATCACTGAGAA 1496
| |||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1413 ATACGCAAAATGTGGTGCCATAGAAATGGCGAGAAGGACTTTCGATCAAATCACTGAGAA 1472
Query 1497 AAGCATCGTCTCTTGGACCGTGATCATTTCAGCATACGCGATTAACGGTTTACCGGATAA 1556
|| |||| |||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct 1473 AAACATCATCTCTTGGACCGTGATCATTTCAGCATATGCTATTAATGGTCTACCGGATAA 1532
Query 1557 AGCATTAGCATCGTTCGATGAAATGAAACGAGATAG-TTACACACCAAACGCTGTGACAT 1615
||||||||||| ||||||||||||||||| | | || |||||||||||||||||||||||
Sbjct 1533 AGCATTAGCATTGTTCGATGAAATGAAACAAAA-AGGTTACACACCAAACGCTGTGACAT 1591
Query 1616 ACCTTGCAGCTTTATCAGCTTGCAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1675
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1592 ATCTGGCAGCTTTATCAGCTTGTAATCATGGAGGATTGGTAAAGAAAGGTCTCATGATCT 1651
Query 1676 TCAGATCAATGGTAGAAGAAGATCAAAAACCTTCGTTACAGCATTACTCTTGCATTGTAG 1735
||| ||||||||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 1652 TCAAATCAATGGTAGAAGAAGATCACAAACCTTCATTGCAACATTACTCTTGCATTGTAG 1711
Query 1736 ACATGCTTAGCCGAGCAGGAGAGATTGATACCGCAATGGAACTAATCAAGAACCTTCCAG 1795
|||||||||||||||| |||||||||||||| || ||||||| |||||||| |||||||
Sbjct 1712 ACATGCTTAGCCGAGCTGGAGAGATTGATACGGCTGTGGAACTTATCAAGAATCTTCCAG 1771
Query 1796 AAGACGTTAAAGCCGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGTAGAAACCGTT 1855
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1772 AAGATGTTAAAGCAGGGGCTAGTGCTTGGGGAGCGATTCTTAGCGGTTGCAGAAACCGTT 1831
Query 1856 T-AAAAAGTGGGATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCATTG 1914
| ||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1832 TTAAAAAATTG-ATCATTACCTCAGAGGTAGTAGCTGAGGTTCTTGAACTCGAGCCCTTG 1890
Query 1915 TGTTCTTCAGGGTATTTGCTTGCGTCAAGCGTC-TTCGCTGCAGAGAAATCATGGGTCGA 1973
||||||||||| || ||||||||||||||| | || |||||||| |||||||||| ||
Sbjct 1891 TGTTCTTCAGGTTACTTGCTTGCGTCAAGCA-CATTTGCTGCAGAAAAATCATGGGAAGA 1949
Query 1974 TGTAGCGATGATGAGAAGTTTGGTGAAGGAGAGAAAGGTTCGAGTCGTTGCGGGTTATAG 2033
|||||| |||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1950 TGTAGCAATGATGAGGAGGTTGGTGAAGGAGAGAAAGGTTCGGGTCGTTGCGGGTTATAG 2009
Query 2034 CATGGTTCTTGAAGGAAGCATTG-CTAGAA-AG-TTTTTGGCTGGAGACAAGTTAAACCA 2090
|||||||| |||||||| | ||| | | || || |||||||||||||||||||||| |||
Sbjct 2010 CATGGTTCGTGAAGGAAAC-TTGGC-A-AAGAGGTTTTTGGCTGGAGACAAGTTAAGCCA 2066
Query 2091 CAGTGATTCTGAGTTAAACGATGTCGTTCAGAGTCTTCACAGATGCATGAGGTTAGACGA 2150
||||||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct 2067 GAGTGATTCTGAATTAAATGATGTCGTTCAGAGTCTTCATAGATGCATGAAGTTAGACGA 2126
Query 2151 TA-TGGTAGGACCGATAAACTAA 2172
|| || ||||||||||||||||
Sbjct 2127 TACTGC-AGGACCGATAAACTAA 2148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107730369570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5