BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319740
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17900.1 | Symbols: SDG37 | SET domain group 37 | chr2:77733... 2414 0.0
> AT2G17900.1 | Symbols: SDG37 | SET domain group 37 | chr2:7773328-7776683
REVERSE LENGTH=1543
Length=1543
Score = 2414 bits (1307), Expect = 0.0
Identities = 1409/1458 (97%), Gaps = 8/1458 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATTTGCAGAGATTTCTACAAGATCGCTGCTTAAGCGTTACGAATCTCCCACAC 60
||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 9 ATGGCGGATTTGCAGAGATTTCTGCAAGATCGCTGCTTAGGCGTTTCGAATCTCCCACAG 68
Query 61 AAAGGCCGCTCTCTATTCACTACCAGAGATATTCGTCCAGGAGAAGTGATTCTAAGCCAA 120
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 69 AAAGGCCGCTCTCTATTCACTGCCAGAGATTTTCGTCCAGGAGAAGTGATTCTAAGCCAA 128
Query 121 AAGCCATATATCTGTGTCCCGAATAATACATCATCGGAATCAAGGTGTGACGGATGTTTC 180
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 129 AAGCCATATATATGTGTTCCGAATAATACATCCTCGGAATCAAGATGTGACGGATGTTTC 188
Query 181 AAAACCAATAACCTGAAGAGATGTTCTGGTTGTCAAGTGGTTTGGTACTGTGGGAGTTCT 240
|| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 189 AAGACCAATAACCTTAAGAAATGTTCTGCTTGTCAAGTGGTTTGGTACTGTGGGAGCTCT 248
Query 241 TGCCAGAAGTCAGAGTGGAAGTTACATCGAC-ATGAATGCAAAGCTCTTACTAGGCTTGA 299
||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||
Sbjct 249 TGCCAGAAGTCAGAGTGGAAGTTACATCG-CGATGAATGCAAAGCTCTCACTAGACTTGA 307
Query 300 GAAGGAGAAACGGAAGTTTGTTACTCCTACAATACGTCTGATGGTTAAACTTTACATCAA 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 GAAGGAGAAACGGAAGTTTGTTACTCCTACAATACGTCTGATGGTTAGACTTTACATCAA 367
Query 360 GAGGAATTTGCAAAATGAAAAGGTCCTGCCTATTACGACAACAGACAATTATAGTTTGGT 419
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 368 GAGGAATTTGCAAAATGAAAAGGTCCTGCCAATTACGACGACAGACAATTATAGTTTGGT 427
Query 420 GGAGGCTTTGGTGTCCCACATGTCTGAGATTGATGAAAAGCAGATGTTGTTGTATGCACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGAGGCTTTGGTGTCCCACATGTCTGAGATTGATGAAAAGCAGATGTTGTTGTATGCACA 487
Query 480 GATGGCTAATCTTGTGAACTTGATTCTTCAATTTCCTAGTGTTGACCTAAGAGAGATCGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GATGGCTAATCTTGTGAACTTGATTCTTCAATTTCCTAGTGTTGACCTAAGAGAGATCGC 547
Query 540 CGAGAACTTCTCAAAGTTCTCATGCAATGCTCATAGCATTTGTGATAGCGAATTGAGACC 599
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CGAGAACTTTTCAAAGTTCTCATGCAATGCTCATAGCATTTGTGATAGCGAATTGAGACC 607
Query 600 TCAAGGGATAGGATTGTTTCCATTGGTTTCCATCATTAATCACAGCTGCTCTCCCAATGC 659
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TCAAGGGATTGGATTGTTTCCATTGGTTTCCATCATTAATCACAGCTGCTCTCCCAATGC 667
Query 660 GGTTTTAGTGTTTGAGGAGCAGATGGCTGTTGTTCGGGCGATGGATAACATATCAAAGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GGTTTTAGTGTTTGAGGAGCAGATGGCTGTTGTTCGGGCGATGGATAACATATCAAAGGA 727
Query 720 TTCAGAGATAACTATCAGCTATATTGAAACCGCTGGAAGTACTCTGACTCGGCAGAAGTC 779
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 728 TTCAGAGATAACTATCAGTTATATTGAAACCGCTGGAAGCACTCTGACTCGGCAGAAGTC 787
Query 780 TCTGAAAGAACAATACCTCTTCCATTGTCAGTGTGCCCGTTGCAGTAA-TGTTGGAAAAC 838
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 788 TCTGAAAGAACAATACCTCTTCCACTGTCAGTGTGCCCGTTGCAGTAACT-TTGGAAAAC 846
Query 839 CTCTTGATATTGAAGAAAGTGCAATATTGGAAGGCTATCGGTGTTCCAATGAGAAATGCA 898
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 847 CTCATGATATTGAAGAAAGTGCAATATTGGAAGGCTATCGGTGTGCCAATGAGAAATGCA 906
Query 899 CTGGTTTCTTACTCCGTGATCCTGAAGAAAAAGGCTTTGTTTGCCAGAAATGCTTGCTTC 958
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 907 CCGGTTTCTTACTCCGTGATCCTGAAGAAAAAGGCTTCGTTTGCCAGAAATGCTTGCTTC 966
Query 959 TTAGGAGCAAGGAAGAGGTTAAAAAGTTAGCAAGTGATCTCAAGACAGTTTCAGAGAAGG 1018
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 967 TTAGGAGCAAGGAAGAGGTTAAAAAGTTAGCAAGTGATCTCAAAACAGTTTCAGAGAAGG 1026
Query 1019 CTCCTGCATCTCCTTCCGCAGAAAATAAACAAGCCGCTATTGAACTATATAAGACAATTG 1078
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1027 CTCCTACATCTCCTTCCGCAGAAGATAAACAAGCCGCTATTGAACTATATAAGACAATTG 1086
Query 1079 AGAAACTACAAGTTAAGCTTTACCATTCTTTCTCCATCACTTTAATGAGAACCCGTGAAA 1138
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1087 AGAAACTACAAGTTAAGCTTTACCATTCTTTCTCCATCCCTTTAATGAGAACCCGTGAAA 1146
Query 1139 AACTTCTCAAGATGCTAATGGACTTAGAAATCTGGAGAGAAGCTTTGAATTACTGCAGAC 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1147 AACTTCTCAAGATGCTAATGGACGTAGAAATCTGGAGAGAAGCTTTGAATTACTGCAGAC 1206
Query 1199 TCATAGTCCCTGTTTACCAAAGAGTATATCCAGCAACCCATCCTTTGATTGGACTGCAGT 1258
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1207 TAATAGTCCCTGTTTACCAAAGAGTATATCCGGCAACCCATCCTTTGATTGGACTGCAGT 1266
Query 1259 TCTATACCCAGGGAAAACTCGAATGGTTACTGGGGGAAACCAAAGAGGCGGTGAGTTCAC 1318
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1267 TCTATACCCAAGGAAAACTCGAATGGTTGCTGGGGGAAACCAAAGAGGCGGTGAGTTCAT 1326
Query 1319 TGATTAAGGCATTTGACATTCTGCGGATCAGCCACGGAACAAGCACACCTTTCATGAAAG 1378
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1327 TGATTAAGGCATTTGACATTCTGCGGATCAGCCATGGAATAAGCACACCTTTCATGAAAG 1386
Query 1379 AGCTCTCAGCAAAGTTGGAGGAAGCTCGTGCAGAAGCTTCTTATAAGC---TTGC-TTGC 1434
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1387 AGCTCTCAGCAAAGTTGGAGGAAGCTCGTGCAGAAGCTTCTTATAAGCAGCTTGCATTGC 1446
Query 1435 ATTGAAAGACGCTTATAA 1452
||||||||||||||||||
Sbjct 1447 ATTGAAAGACGCTTATAA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5