BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319751

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63030.1 | Symbols:  | Thioredoxin superfamily protein | chr...   540    4e-153


> AT5G63030.1 | Symbols:  | Thioredoxin superfamily protein | chr5:25286223-25287694 
FORWARD LENGTH=684
Length=684

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 353/379 (93%), Gaps = 17/379 (4%)
 Strand=Plus/Plus

Query  1    ATGGGTTCAATGTTCAGTGGAAACAGGATGAGCAAGGAAGAGATGGAGGTGGTGGTGAAC  60
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  130  ATGGGTTCAATGTTCAGTGGAAACCGAATGAGCAAGGAAGAGATGGAGGTGGTGGTGAAC  189

Query  61   AAGGCTAAAGAGATCGTCTCTGCTTATCCC------G--TT-------ACATACTGTGGT  105
            ||||||||||||||||||||||||||||||      |  ||       ||||||||||||
Sbjct  190  AAGGCTAAAGAGATCGTCTCTGCTTATCCCGTTGTTGTCTTCAGCAAGACATACTGTGGT  249

Query  106  TACTGCCAGAGGGTGAAGCAGTTACTGACACAGCTAGGAGCAACTTTTAAAGTACTTGAG  165
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  250  TATTGCCAGAGGGTGAAGCAGTTACTGACGCAGCTAGGAGCAACTTTTAAAGTACTTGAG  309

Query  166  CTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGTGGACTGGACAG  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310  CTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGTGGACTGGACAG  369

Query  226  AGCACAGTTCCAAACGTCTTCATCAAAGGAAAACACATCGGTGGATGCGATAGAGTGATA  285
            | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  370  ACCACAGTTCCAAACGTCTTCATCAAAGGAAACCACATCGGTGGATGCGATAGAGTGATG  429

Query  286  GAGACCAACAAGCAAGGCAAACTTGTGCCTCTACTTACTGAAGCTGGGGCTATTGCCA-A  344
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct  430  GAGACCAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGGGCTATTGC-AGA  488

Query  345  TAACACTTCTCAACTTTGA  363
            |||| ||||||||||||||
Sbjct  489  TAACTCTTCTCAACTTTGA  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5