BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319762
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18110.1 | Symbols: | Translation elongation factor EF1B/r... 1112 0.0
AT1G30230.2 | Symbols: | Glutathione S-transferase, C-terminal... 998 0.0
> AT2G18110.1 | Symbols: | Translation elongation factor EF1B/ribosomal
protein S6 family protein | chr2:7872251-7873912
FORWARD LENGTH=978
Length=978
Score = 1112 bits (602), Expect = 0.0
Identities = 666/697 (96%), Gaps = 4/697 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGCATTCCCCAACCTCAACTCT-GCTTCTGGTTTGAAGAAGCTCGATGAGCATCT 59
||||| || |||||||||||||||||| || || || |||||||||||||||||||||||
Sbjct 84 ATGGCGGCTTTCCCCAACCTCAACTCTGGC-TCCGGATTGAAGAAGCTCGATGAGCATCT 142
Query 60 TCTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTCTTTAC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 143 TCTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTGTTTAC 202
Query 120 ATCTCTTTCAAAGCCCCCAACTTCAGAGTATGTGAATGTTTCTCGTTGGTTCAACCACAT 179
| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 203 AGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACAT 262
Query 180 CGATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGA-GG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 263 CGATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGAAGG 322
Query 239 GATCATCACCGATCACAGAAGAGGCTGTTGCTTCTCCCCCTGCAGCTGATTCTAAGGATA 298
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 323 G-TCATCACCTATCACAGAAGAGGCTGTTGCTACTCCCCCTGCAGCTGATTCTAAGGATA 381
Query 299 CTGCGGCtgatgaagatgatgatgatgatgTTGACCTTTTCGGGGAGGAGACTGAAGAAG 358
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 382 CTGCTGCTGAAGAAGAAGATGATGATGATGTTGACCTTTTCGGGGAGGAGACCGAAGAGG 441
Query 359 AAAAGAAAGCTGCTGAAGAGAGAGCTGCTTCTGTGAAGGCATCTACAAAGAAGAAGGAAT 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 442 AAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTGAAGGCATCTACAAAGAAGAAAGAAT 501
Query 419 CCGGAAAGTCATCAGTTTTAATTGATATCAAGCCGTGGGATGATGAGACCGACATGAAGA 478
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 502 CCGGAAAGTCATCAGTTTTGATGGATATCAAGCCGTGGGATGATGAGACGGACATGAAGA 561
Query 479 AGCTAGAGGAAGCTGTAAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AGCTAGAGGAAGCTGTAAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGC 621
Query 539 TTGTACCAGTTGGTTACGGTATCAAGAAATTGCAGATCATGTGCACCATTGTTGATGACC 598
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 622 TTGTACCCGTTGGTTACGGTATCAAGAAGTTGCACATCATGTGCACCATTGTTGATGACC 681
Query 599 TTGTGTCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCAATCAATGAATTTG 658
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 682 TTGTATCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATG 741
Query 659 TCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATG 695
|||||||||||||||||||||||||||||||||||||
Sbjct 742 TCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATG 778
> AT1G30230.2 | Symbols: | Glutathione S-transferase, C-terminal-like;Translation
elongation factor EF1B/ribosomal protein
S6 | chr1:10638914-10640782 FORWARD LENGTH=1049
Length=1049
Score = 998 bits (540), Expect = 0.0
Identities = 647/700 (92%), Gaps = 2/700 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGCATTCCCCAACCTCAACTCTGCTTCTGGTTTGAAGAAGCTCGATGAGCATCTT 60
|||||||||||||| ||||| ||||||| | |||| |||||||||||||| |||||||||
Sbjct 86 ATGGCAGCATTCCCTAACCTTAACTCTGATGCTGGATTGAAGAAGCTCGACGAGCATCTT 145
Query 61 CTCACTCGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGATATCACTGTCTTTACA 120
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| ||
Sbjct 146 CTCACTCGCAGTTACATTACTGGATACCAGGCTTCAAAGGATGATATCACCGTCTTTGCA 205
Query 121 TCTCTTTCAAAGCCCCCAACTTCAGAGTATGTGAATGTTTCTCGTTGGTTCAACCACATC 180
||||| ||||||||||||||||| |||||||||| | ||||||||||| ||| |||||
Sbjct 206 GCTCTTGCAAAGCCCCCAACTTCACAGTATGTGAACGCTTCTCGTTGGTACAATCACATT 265
Query 181 GATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGTGGTGTCATTGTTGAGGGA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 266 GATGCCCTCTTGAGGATCTCTGGTGTCTCTGCTGAAGGAAGCGGTGTCATTGTTGAGGGA 325
Query 241 TCATCACCGATCACAGAAGAGGCTGTTGCTTCTCCCCCTGCAGCTGATTCTAAGGATACT 300
||| | || ||||| || |||||||||||| |||||||||||||||||||||||||| ||
Sbjct 326 TCAGCTCCTATCACTGAGGAGGCTGTTGCTACTCCCCCTGCAGCTGATTCTAAGGATGCT 385
Query 301 GCGGCtgatgaagatgatgatgatgatgTTGACCTTTTCGGGGAGGAGACTGAAGAAGAA 360
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 386 GCGGCTGATGAAGAAGATGATGATGATGTTGACCTTTTCGGAGAGGAGACCGAAGAGGAA 445
Query 361 AAGAAAGCTGCTGAAGAGAGAGCTGCTTCTGTGAAGGCATCTACAAAGAAGAAGGAATCC 420
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 446 AAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATCT 505
Query 421 GGAAAGTCATCAGTTTTAATTGATATCAAGCCGTGGGATGATGAGACCGACATGAAGAAG 480
|||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 506 GGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGACATGAAGAAG 565
Query 481 CTAGAGGAAGCTGT-AAGATCCATTCAGATGGAAGGATTGTTTTGGGGAGCATCAAAGCT 539
|| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 566 CTTGAGGAAGCTGTGAAG-TCCATTCAGATGGAAGGTTTGTTTTGGGGAGCATCAAAGCT 624
Query 540 TGTACCAGTTGGTTACGGTATCAAGAAATTGCAGATCATGTGCACCATTGTTGATGACCT 599
||| ||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||
Sbjct 625 TGTCCCAGTTGGTTATGGTATCAAGAAGTTGCAGATTTTGTGCACCATTGTTGACGACCT 684
Query 600 TGTGTCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCAATCAATGAATTTGT 659
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 685 TGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGT 744
Query 660 CCAGAGTTGTGACATTGTTGCCTTCAACAAGATATGTAAG 699
|||||| |||||||||||||||||||||||||||||||||
Sbjct 745 CCAGAGCTGTGACATTGTTGCCTTCAACAAGATATGTAAG 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5