BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319763

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18115.1 | Symbols:  | pseudogene, glycine-rich protein, pre...   265    4e-70


> AT2G18115.1 | Symbols:  | pseudogene, glycine-rich protein, predicted 
proteins, Arabidopsis thaliana | chr2:7874137-7875027 
FORWARD LENGTH=891
Length=891

 Score =  265 bits (143),  Expect = 4e-70
 Identities = 221/256 (86%), Gaps = 15/256 (6%)
 Strand=Plus/Plus

Query  1    ATGTCAAGCTTTGTGGTGTTCTTGTTAGTTTTTGGTGTTGTGTTGTTGCTGTTGAGTTCA  60
            |||||||||||||||||||||||||||| || ||||| ||||||| |  |||||||||||
Sbjct  115  ATGTCAAGCTTTGTGGTGTTCTTGTTAGGTTCTGGTGCTGTGTTG-T--TGTTGAGTTCA  171

Query  61   AGCTCTGTTCACGGACTGCGATATAGACCCGTGAGGAGAGT-CTTTAATAGTACTGATCA  119
            |||||||| ||||| |||||||||||||||||||||||| |  |||||||||| ||||||
Sbjct  172  AGCTCTGTCCACGGGCTGCGATATAGACCCGTGAGGAGA-TATTTTAATAGTAGTGATCA  230

Query  120  ATCTTCCGTTTTGGGTTCCAACAAAATGTTTGAAAGTGG---ATATAACAAAGCACGAAG  176
            |||||||||||||||||||||||||| ||||||||||||   | ||||||||||||||||
Sbjct  231  ATCTTCCGTTTTGGGTTCCAACAAAACGTTTGAAAGTGGTGGACATAACAAAGCACGAAG  290

Query  177  AGTGCAAGAAGGTAATGTAGATGGAG-A--CTGTGGAGGT-TGTAGCGGTGGAGAAGGA-  231
            ||||||||||||| ||||||| | || |  ||| | |  | || || ||  ||||| || 
Sbjct  291  AGTGCAAGAAGGTGATGTAGAAGAAGGAGGCTGCGAAA-TCTGCAGAGGAAGAGAAAGAG  349

Query  232  AGCTGTGGAGGTTGTA  247
            | ||||||||||||||
Sbjct  350  A-CTGTGGAGGTTGTA  364


 Score =  163 bits (88),  Expect = 2e-39
 Identities = 152/180 (84%), Gaps = 16/180 (9%)
 Strand=Plus/Plus

Query  200  GAGACTGTGGAGGTTGTAGCGGTGGAGAAGGAAGCTGTGGAGGTTGTAAtggatcaggag  259
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct  347  GAGACTGTGGAGGTTGTACCGGTGGAGAAGGAAGCTGTGAAGGTTGTAATGGAGCAGGAG  406

Query  260  gaag-tcggggagatggcggaag-aggaggtggtgg-a--gg-ag-g-aggaggccgcgg  311
            |||| || ||||||||| || || |||||| || || |  || || | |||| |  | ||
Sbjct  407  GAAGTTC-GGGAGATGGTGG-AGCAGGAGGAGGAGGAAGCGGTAGAGTAGGAAGAAGAGG  464

Query  312  -aa--g--aa-gaaATGGCAAAGGACAAGGTGACGACGGTGGAAAAGAAGATTGCAATGA  365
             ||  |  || || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  465  AAATGGCAAAGGAGATGGGAAAGGACAAGGTGACGACGGTGGAAAAGAAGATTGCAATGA  524


 Score =  115 bits (62),  Expect = 5e-25
 Identities = 82/91 (90%), Gaps = 3/91 (3%)
 Strand=Plus/Plus

Query  362  ATGATAGGAACAATGGTAATGGTGTTGGTATTGGTATAGGTATAGG---AGGTGATGAAC  418
            ||||||||||||| ||| ||||||||||||||||||| ||||||||   ||| | |||||
Sbjct  545  ATGATAGGAACAACGGTGATGGTGTTGGTATTGGTATTGGTATAGGTATAGGAGGTGAAC  604

Query  419  CTAGCCCtggatccggaggtggtggaggtgg  449
            |||||||||||||||||||||| ||||||||
Sbjct  605  CTAGCCCTGGATCCGGAGGTGGAGGAGGTGG  635



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28583229643


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5