BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319764
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT2G18120.1 | Symbols: SRS4 | SHI-related sequence 4 | chr2:787... 811 0.0
AT1G52942.1 | Symbols: | Pseudogene of AT2G18120; SRS4 (SHI-RE... 473 7e-133
> AT2G18120.1 | Symbols: SRS4 | SHI-related sequence 4 | chr2:7876615-7877681
REVERSE LENGTH=776
Length=776
Score = 811 bits (439), Expect = 0.0
Identities = 569/629 (90%), Gaps = 20/629 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGGGATAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGG 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 16 ATGGCTGGGACAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGG 75
Query 61 GTTTGGTACAGAA-ACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCA 119
|||||||||| || || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 76 GTTTGGTACA-AACACACCAATAATAACCTAAGTACGAGCCACAACAATCAGATATGGCA 134
Query 120 GCAGCCAAGCCTGGATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATC 179
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 135 GCAGCCAAGCCTCGATCTATATCCGGGTCAGATCGACGTCTGTGATATGACCACGTCATC 194
Query 180 CAGATCCCTAACCATAAGCTGTCAAGACTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 239
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 195 GAGATCTCTAACGATAAGCTGTCAAGAGTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 254
Query 240 TGGACGGTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAG 299
|| |||||||||||||||||||||| |||| ||||||||||| || ||||| |||||
Sbjct 255 CGGGCGGTGTAGAACTTGCTGCAAGAGTAACGGACTCCACTGTCCCACCCACGTGAGGAG 314
Query 300 CACGTGGATCCCCATCGCCAAACGCCGCGAGCGGCAGCAGCAGATACAGACGCCAATCTC 359
||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 315 CACGTGGATCCCCATTGCCAAACGCCGTGAGCGGCAGCAGCAGCTACAGACGCCAACCTC 374
Query 360 CAACCGAAATGGCGGTGGCGACAGAGTTGGGAACATCCCAACACCGTATAGAGAGATTGA 419
||||| || |||||| ||| |||||||||||| ||||||||| ||| |
Sbjct 375 CAACCCAACCGGCGGTAGCGGCAGAGTTGGGAA------------GTATAGAGACATTAA 422
Query 420 TCAACCGGCTA----A--CTCATCAGGGTTAGAGATGGGAGAGGCAACATTTCCAGATGA 473
||||| |||| | ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 423 TCAACATGCTACTTTAGACTCATCAGGGTTAGAGATGGGAGAGACAAGATTTCCAGATGA 482
Query 474 AGTGAGCTCGGATGCACTTTTCCGGTGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 533
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 483 AGTGAGCTCGGATGCACTTTTCCGATGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 542
Query 534 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGCCATCTCTTTAAGGGAATTCTATA 593
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 543 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGTCATCTCTTTAAAGGAATTCTCTA 602
Query 594 TAACCAAGGTCCGGAAAACATGTCCATGC 622
|||||||||||| ||||||| ||||||||
Sbjct 603 TAACCAAGGTCCAGAAAACAAGTCCATGC 631
> AT1G52942.1 | Symbols: | Pseudogene of AT2G18120; SRS4 (SHI-RELATED
SEQUENCE 4) | chr1:19724222-19724588 FORWARD LENGTH=367
Length=367
Score = 473 bits (256), Expect = 7e-133
Identities = 328/361 (91%), Gaps = 11/361 (3%)
Strand=Plus/Plus
Query 13 GGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGGGTTTGGTACAGA 72
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGGGTTTGGTACAGA 60
Query 73 AACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCAGCAGCCAAGCCTG 132
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCACCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCAGCAGCCAAGCCTC 120
Query 133 GATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATCCAGATCCCTAACC 192
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 121 GATCTATATCCGGGTCAGATCGAGGTCTGTGATTTGACCACGTCATCGAGATCTCTAACG 180
Query 193 ATAAGCTGTCAAGACT---G--T--GGAAACCAAGCCAAGAAAGGGTGCACGCATGGACG 245
|||||||||||||||| | | ||||||||||||||||||||||||||||| || ||
Sbjct 181 ATAAGCTGTCAAGACTCAAGAGTATGGAAACCAAGCCAAGAAAGGGTGCACGCACGGGCG 240
Query 246 GTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAGCACGTG 305
||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||
Sbjct 241 TTGTAGAACTTGCTGCAAGAGTCACGGGCTCCACTGTCCCACCCACGTGAGGAGCACGTG 300
Query 306 GATCCCCATCGCCAAACGCCGCGAGCG-GCA-GCAGCAGATACAGACGCCAATCTCCAAC 363
||||||||| ||||||||||| ||| | ||| | || | |||||||||||| |||||||
Sbjct 301 GATCCCCATTGCCAAACGCCGTGAG-GAGCACGT-GCTGCTACAGACGCCAACCTCCAAC 358
Query 364 C 364
|
Sbjct 359 C 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5