BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg319771

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18196.1 | Symbols:  | Heavy metal transport/detoxification ...   821    0.0  


> AT2G18196.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr2:7920508-7922326 REVERSE LENGTH=880
Length=880

 Score =  821 bits (444),  Expect = 0.0
 Identities = 507/538 (94%), Gaps = 2/538 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTTTTGGCTCCTTCTTATCTACCCTCACATACTGTTTGTTCCTTCGCCATCCACAT  60
            ||| |||| ||||||||| |||||||| |||| |||||||||||| ||||| ||||||||
Sbjct  59   ATGGGTTTCGGCTCCTTCATATCTACCATCACTTACTGTTTGTTCTTTCGCTATCCACAT  118

Query  61   AAAAAGTCAAAGCTCAATAGTGTGAGCCACCAT-AACTATTACCACACCAAGCCAATGTC  119
            || ||| ||||| |||| ||||||||||||| | ||| |||||||||||| ||||||| |
Sbjct  119  AAGAAGCCAAAGTTCAAAAGTGTGAGCCACC-TCAACCATTACCACACCATGCCAATGGC  177

Query  120  TCGTCCACTTTCTTTACAGACAATAGACTTGAAAGTAAGGATGTGCTGCAGTGGATGTGA  179
            ||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||
Sbjct  178  TCGTCCACTTTCTTTACAGACGATAGACCTGAAAGTAAGGATGTGTTGCAGTGGATGTGA  237

Query  180  GAGGGTGGTTAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCT  239
            |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  GAGGGTTGTCAAGCATGCCATTTACAAGCTGAGAGGGGTGGACTCGGTGGAGGTGAACCT  297

Query  240  GGAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGT  299
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  AGAGATGGAGAGAGTAACGGTGGTTGGGTACGTAGAGAGGAAGAAGGTGCTCAAGGCGGT  357

Query  300  GAGAAGAGCCGGTAAACGAGCCGAGTTCTGGCCCTACCCGGACATGCCTCGCTACTTCAC  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  358  GAGAAGAGCCGGTAAACGAGCCGAGTTCTGGCCCTACCCGGACATGCCTCGCTACTTCAC  417

Query  360  TTCCTCCGACCATTACTTCAAAGATACCACCCGTGAGTTCAGGGAGAGCTACAACTACTA  419
            |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct  418  TTCCTCTGACCATTACTTCAAAGATACCACCCGCGAGTTTAGGGAGAGCTACAACTACTA  477

Query  420  TCGCCATGGCTACAATCTTAGCGACCGTCATGGTAACATCCACGTCACCAACCGTGGCGA  479
            ||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct  478  TCGCCATGGCTACAACCTTAGTGACCGTCACGGTAACATTCACGTCACCAACCGTGGTGA  537

Query  480  CGACAAAATGAGCAACTTTTTCAACGACGACAACGTCCACGCCTGTAGCCTTATGTAA  537
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  538  CGACAAAATGAGCAACTTTTTCAACGACGACAACGTCCACGCATGTAGCCTTATGTAA  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5